Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 116585 | 0.79 | 0.144073 |
Target: 5'- gGGCAcGGCGgGCCcCCCggCCGCCGCUCu -3' miRNA: 3'- -UCGU-UCGUgCGGuGGGa-GGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 119837 | 0.7 | 0.513181 |
Target: 5'- gGGCGgcGGCGCGUCGCgg-CCGCCGCa- -3' miRNA: 3'- -UCGU--UCGUGCGGUGggaGGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 120179 | 0.7 | 0.522471 |
Target: 5'- cGGCAccuGCGCGaUgGCCCcCCGCCGCa- -3' miRNA: 3'- -UCGUu--CGUGC-GgUGGGaGGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 155243 | 0.66 | 0.760819 |
Target: 5'- cGCGAGCGCuGCCGCgagaCUCC-CUGCg- -3' miRNA: 3'- uCGUUCGUG-CGGUGg---GAGGcGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 167637 | 0.75 | 0.271981 |
Target: 5'- cGC-GGC-CGCCACCC-CCGCCGC-Ca -3' miRNA: 3'- uCGuUCGuGCGGUGGGaGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 162353 | 0.74 | 0.290791 |
Target: 5'- gGGCccGC-CGCCGCCg-CCGCCGCUCc -3' miRNA: 3'- -UCGuuCGuGCGGUGGgaGGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 159501 | 0.73 | 0.360761 |
Target: 5'- uGCAGGCGCGCCugCagCUCCGUCGa-- -3' miRNA: 3'- uCGUUCGUGCGGugG--GAGGCGGCgag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 75862 | 0.73 | 0.368371 |
Target: 5'- cAGCAacAGC-CGCCGCCg-CCGCCGC-Cg -3' miRNA: 3'- -UCGU--UCGuGCGGUGGgaGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 91459 | 0.72 | 0.407223 |
Target: 5'- gAGCGgacGGCAcCGUCGCCgUcaguccgCCGCCGCUCg -3' miRNA: 3'- -UCGU---UCGU-GCGGUGGgA-------GGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 180946 | 0.71 | 0.459013 |
Target: 5'- -cCGAGCGCGCCGguaCCUCCuuGCCGgUCa -3' miRNA: 3'- ucGUUCGUGCGGUg--GGAGG--CGGCgAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 173305 | 0.72 | 0.416292 |
Target: 5'- cAGCugcuGC-CGCCGCCg-CCGCCGCUg -3' miRNA: 3'- -UCGuu--CGuGCGGUGGgaGGCGGCGAg -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 160677 | 0.72 | 0.391854 |
Target: 5'- cGCcgaGGGCAgGUUGCCCUCCGCCaGCUg -3' miRNA: 3'- uCG---UUCGUgCGGUGGGAGGCGG-CGAg -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 32774 | 0.76 | 0.242267 |
Target: 5'- cGGCAcccuaucGGCACGCCACCCgcucaucguuucUCCGCgugaUGCUCg -3' miRNA: 3'- -UCGU-------UCGUGCGGUGGG------------AGGCG----GCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 167360 | 0.71 | 0.433091 |
Target: 5'- cAGaCAGGguCGCCGCUgccguCUCCGCCGC-Ca -3' miRNA: 3'- -UC-GUUCguGCGGUGG-----GAGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 101610 | 0.75 | 0.259993 |
Target: 5'- cGguGGCgGCGCCGCCgCcgCUGCCGCUCg -3' miRNA: 3'- uCguUCG-UGCGGUGG-Ga-GGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 198132 | 0.72 | 0.383919 |
Target: 5'- uGCGAGCugGUCAUCg-CCGCCGC-Ca -3' miRNA: 3'- uCGUUCGugCGGUGGgaGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 94645 | 0.71 | 0.433091 |
Target: 5'- cGGCcGGCGCGUCACCgUCCcugaagaacucGCCGCg- -3' miRNA: 3'- -UCGuUCGUGCGGUGGgAGG-----------CGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 137955 | 0.7 | 0.522471 |
Target: 5'- cGCAA-CGCGCgGCCCUCCGagCGCg- -3' miRNA: 3'- uCGUUcGUGCGgUGGGAGGCg-GCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 66390 | 0.75 | 0.265933 |
Target: 5'- cGCu-GC-CGCCGCCg-CCGCCGCUCg -3' miRNA: 3'- uCGuuCGuGCGGUGGgaGGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 210165 | 0.74 | 0.308578 |
Target: 5'- gGGUcucuAGCACGCCAuucggcagcuucguCCCgacaCCGCCGCUCc -3' miRNA: 3'- -UCGu---UCGUGCGGU--------------GGGa---GGCGGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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