miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 178792 0.69 0.535583
Target:  5'- cGC-GGCcaGCGCCAUCCagcagggauccauaCCGCCGCUCu -3'
miRNA:   3'- uCGuUCG--UGCGGUGGGa-------------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 120179 0.7 0.522471
Target:  5'- cGGCAccuGCGCGaUgGCCCcCCGCCGCa- -3'
miRNA:   3'- -UCGUu--CGUGC-GgUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 160677 0.72 0.391854
Target:  5'- cGCcgaGGGCAgGUUGCCCUCCGCCaGCUg -3'
miRNA:   3'- uCG---UUCGUgCGGUGGGAGGCGG-CGAg -5'
15972 3' -61.6 NC_004065.1 + 66390 0.75 0.265933
Target:  5'- cGCu-GC-CGCCGCCg-CCGCCGCUCg -3'
miRNA:   3'- uCGuuCGuGCGGUGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 197050 0.68 0.589031
Target:  5'- cGCgAGGCcucCGUCAUgCUCCGCCGCg- -3'
miRNA:   3'- uCG-UUCGu--GCGGUGgGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 63136 0.69 0.550707
Target:  5'- cAGCGAGCccaucaACGCCACCgUCgaacacaagUGCCGCg- -3'
miRNA:   3'- -UCGUUCG------UGCGGUGGgAG---------GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 119837 0.7 0.513181
Target:  5'- gGGCGgcGGCGCGUCGCgg-CCGCCGCa- -3'
miRNA:   3'- -UCGU--UCGUGCGGUGggaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 101610 0.75 0.259993
Target:  5'- cGguGGCgGCGCCGCCgCcgCUGCCGCUCg -3'
miRNA:   3'- uCguUCG-UGCGGUGG-Ga-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 154515 0.69 0.54502
Target:  5'- -cCAGGCACGCCaacgcuauucacugcGCCCUgauccucgCCGCCGCcaUCg -3'
miRNA:   3'- ucGUUCGUGCGG---------------UGGGA--------GGCGGCG--AG- -5'
15972 3' -61.6 NC_004065.1 + 32774 0.76 0.242267
Target:  5'- cGGCAcccuaucGGCACGCCACCCgcucaucguuucUCCGCgugaUGCUCg -3'
miRNA:   3'- -UCGU-------UCGUGCGGUGGG------------AGGCG----GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 137955 0.7 0.522471
Target:  5'- cGCAA-CGCGCgGCCCUCCGagCGCg- -3'
miRNA:   3'- uCGUUcGUGCGgUGGGAGGCg-GCGag -5'
15972 3' -61.6 NC_004065.1 + 110712 0.69 0.541239
Target:  5'- gGGCGAGagcCGCCACCCUcgacCCGaagacCUGCUCg -3'
miRNA:   3'- -UCGUUCgu-GCGGUGGGA----GGC-----GGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 167360 0.71 0.433091
Target:  5'- cAGaCAGGguCGCCGCUgccguCUCCGCCGC-Ca -3'
miRNA:   3'- -UC-GUUCguGCGGUGG-----GAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 91459 0.72 0.407223
Target:  5'- gAGCGgacGGCAcCGUCGCCgUcaguccgCCGCCGCUCg -3'
miRNA:   3'- -UCGU---UCGU-GCGGUGGgA-------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 159501 0.73 0.360761
Target:  5'- uGCAGGCGCGCCugCagCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUGCGGugG--GAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 167637 0.75 0.271981
Target:  5'- cGC-GGC-CGCCACCC-CCGCCGC-Ca -3'
miRNA:   3'- uCGuUCGuGCGGUGGGaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 61084 0.68 0.608385
Target:  5'- uGUcGGCGCGCUGCUCUgCGUCGCg- -3'
miRNA:   3'- uCGuUCGUGCGGUGGGAgGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 1030 0.68 0.598697
Target:  5'- cGCuccGCGCGCU-CCCU-CGCCGUUCg -3'
miRNA:   3'- uCGuu-CGUGCGGuGGGAgGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 128433 0.69 0.579394
Target:  5'- uGCGAcGCGCGCCGCCuCUCC-CUGUcCg -3'
miRNA:   3'- uCGUU-CGUGCGGUGG-GAGGcGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 120770 0.69 0.557366
Target:  5'- cGCGAGUcgucaucgucaccgACGCCGCUaccgCCGCCGuCUCc -3'
miRNA:   3'- uCGUUCG--------------UGCGGUGGga--GGCGGC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.