miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 208964 0.66 0.93332
Target:  5'- cGGAcacGGUGuGGCGAGAC-GG-GGGAg- -3'
miRNA:   3'- -CCU---CCGCuCCGCUUUGaCCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 71951 0.66 0.932832
Target:  5'- cGGAGGCGAcgccgccGGUGGAGCcgGGCagcccGGAg- -3'
miRNA:   3'- -CCUCCGCU-------CCGCUUUGa-CCGc----CCUau -5'
15972 5' -57.2 NC_004065.1 + 222759 0.66 0.927831
Target:  5'- aGGAGGgGAGGCGGAAucagacacauagcCUGGCu----- -3'
miRNA:   3'- -CCUCCgCUCCGCUUU-------------GACCGcccuau -5'
15972 5' -57.2 NC_004065.1 + 31093 0.66 0.927831
Target:  5'- cGGGcGGCGAucagaacgcccGGCGGcgcgcgaucgagaGGCUGGaCGGGAa- -3'
miRNA:   3'- -CCU-CCGCU-----------CCGCU-------------UUGACC-GCCCUau -5'
15972 5' -57.2 NC_004065.1 + 48107 0.66 0.923138
Target:  5'- cGGcGGCGGuGGCGGcGGC-GGUGGGAc- -3'
miRNA:   3'- -CCuCCGCU-CCGCU-UUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 59141 0.66 0.923138
Target:  5'- cGAGcGCGAGGCGAcGAC-GGCGaGAg- -3'
miRNA:   3'- cCUC-CGCUCCGCU-UUGaCCGCcCUau -5'
15972 5' -57.2 NC_004065.1 + 35527 0.66 0.923138
Target:  5'- cGGAGGUGGGGaCGGGcACggucGGuuGGAUAa -3'
miRNA:   3'- -CCUCCGCUCC-GCUU-UGa---CCgcCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 18928 0.66 0.923138
Target:  5'- ----cCGAGGCGAGAC-GGCGGGc-- -3'
miRNA:   3'- ccuccGCUCCGCUUUGaCCGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 172723 0.66 0.912059
Target:  5'- uGAGGCGuauGCGAAugaGCUGGgCGGGu-- -3'
miRNA:   3'- cCUCCGCuc-CGCUU---UGACC-GCCCuau -5'
15972 5' -57.2 NC_004065.1 + 68891 0.66 0.912059
Target:  5'- aGAcGGcCGAGGUGAAGCUGGaGGuGAc- -3'
miRNA:   3'- cCU-CC-GCUCCGCUUUGACCgCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 117191 0.66 0.905586
Target:  5'- uGGGGC-AGGCGuuGCgccaggcaggugaUGGCGGGGa- -3'
miRNA:   3'- cCUCCGcUCCGCuuUG-------------ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 75650 0.67 0.900092
Target:  5'- aGGAGGUGGaaguggaggucGGCGAGGCggccGCGGGcUGa -3'
miRNA:   3'- -CCUCCGCU-----------CCGCUUUGac--CGCCCuAU- -5'
15972 5' -57.2 NC_004065.1 + 223885 0.67 0.89378
Target:  5'- cGGAGaugaCGAGuaGGAGCUGGCGGcGGc- -3'
miRNA:   3'- -CCUCc---GCUCcgCUUUGACCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 103706 0.67 0.89378
Target:  5'- uGGGcGGCGGGGagcgcCUGGCGGGcGUGa -3'
miRNA:   3'- -CCU-CCGCUCCgcuuuGACCGCCC-UAU- -5'
15972 5' -57.2 NC_004065.1 + 185445 0.67 0.887254
Target:  5'- aGGAGGaCGAGGagugaugaUGAAGgUGGUGGuGGUGc -3'
miRNA:   3'- -CCUCC-GCUCC--------GCUUUgACCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 185399 0.67 0.887254
Target:  5'- uGAGGCGA-GUGAuGgUGGUGGGGa- -3'
miRNA:   3'- cCUCCGCUcCGCUuUgACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 19437 0.67 0.885923
Target:  5'- cGGAGGCaccgcgcugcuGGCGAugAGCgUGGUGGGGa- -3'
miRNA:   3'- -CCUCCGcu---------CCGCU--UUG-ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 203610 0.67 0.880516
Target:  5'- cGGAGGCcgccgccgccGuGGCGGAguuGgaGGCGGGGg- -3'
miRNA:   3'- -CCUCCG----------CuCCGCUU---UgaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 194214 0.67 0.880516
Target:  5'- uGGAGaCGGGGaucccuUUGGCGGGAUGg -3'
miRNA:   3'- -CCUCcGCUCCgcuuu-GACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 98393 0.67 0.879831
Target:  5'- uGGuGGCGAGGagggcgaUGAGAgUGGCGGcGGc- -3'
miRNA:   3'- -CCuCCGCUCC-------GCUUUgACCGCC-CUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.