miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 34389 1.09 0.003566
Target:  5'- gGGAGGCGAGGCGAAACUGGCGGGAUAa -3'
miRNA:   3'- -CCUCCGCUCCGCUUUGACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 109112 0.77 0.366901
Target:  5'- cGGAGGagaGGGGaCGGAGgUGGCGGGGa- -3'
miRNA:   3'- -CCUCCg--CUCC-GCUUUgACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 143336 0.75 0.477408
Target:  5'- cGGGGGCGgcggcaGGGCGAGggaacACUGGgGGGGa- -3'
miRNA:   3'- -CCUCCGC------UCCGCUU-----UGACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 221845 0.74 0.543291
Target:  5'- uGGGGCGucGGGUGGGugguGCUGGUGGGAa- -3'
miRNA:   3'- cCUCCGC--UCCGCUU----UGACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 211404 0.74 0.543291
Target:  5'- cGGAGGCGGGG-GAAACgugggccugGGCGGuGAc- -3'
miRNA:   3'- -CCUCCGCUCCgCUUUGa--------CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 201313 0.73 0.572463
Target:  5'- aGGAGGaGAGGaUGAuGgUGGCGGGGUGc -3'
miRNA:   3'- -CCUCCgCUCC-GCUuUgACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 192728 0.72 0.621789
Target:  5'- cGGGGGCucuuGAGGCcgccGAAACUGGCgcucuucucuGGGGUGg -3'
miRNA:   3'- -CCUCCG----CUCCG----CUUUGACCG----------CCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 145716 0.72 0.651526
Target:  5'- aGGAGGaGAGGUcgguGGAGgaGGCGGGAg- -3'
miRNA:   3'- -CCUCCgCUCCG----CUUUgaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 120556 0.72 0.661419
Target:  5'- cGGcGGCGGucGGCGcGAGCgGGCGGGAc- -3'
miRNA:   3'- -CCuCCGCU--CCGC-UUUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 75789 0.72 0.661419
Target:  5'- cGGucGGCGAGGgGGAGC-GGCGGcGAg- -3'
miRNA:   3'- -CCu-CCGCUCCgCUUUGaCCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 139848 0.71 0.681131
Target:  5'- gGGAGGCG-GGCGAcGGCggaGGCGGcGGa- -3'
miRNA:   3'- -CCUCCGCuCCGCU-UUGa--CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 148868 0.71 0.700692
Target:  5'- aGGAGGCGGcGGCGggG--GGCGaGGGg- -3'
miRNA:   3'- -CCUCCGCU-CCGCuuUgaCCGC-CCUau -5'
15972 5' -57.2 NC_004065.1 + 74916 0.71 0.709427
Target:  5'- aGGaAGGCGAcgcaGGgGGAGCUGGCcugguugggaaugGGGAUGc -3'
miRNA:   3'- -CC-UCCGCU----CCgCUUUGACCG-------------CCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 214204 0.71 0.710395
Target:  5'- gGGGGGacCGGGGUGAucauuuguaGACgGGCGGGAc- -3'
miRNA:   3'- -CCUCC--GCUCCGCU---------UUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 28962 0.71 0.714259
Target:  5'- cGGAGGCGGGGCGcuacGACacggaucagucuccGGCGGcGGUGg -3'
miRNA:   3'- -CCUCCGCUCCGCu---UUGa-------------CCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 23607 0.7 0.720036
Target:  5'- aGGcGGUGAGGCG-GGCaGGCGGGu-- -3'
miRNA:   3'- -CCuCCGCUCCGCuUUGaCCGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 657 0.7 0.729606
Target:  5'- gGGGGGCGGguauaauacccGGgGAGuAUUGGCGGGGc- -3'
miRNA:   3'- -CCUCCGCU-----------CCgCUU-UGACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 4371 0.7 0.739097
Target:  5'- uGGAGcGCGAcGGCG--GC-GGCGGGAg- -3'
miRNA:   3'- -CCUC-CGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 77010 0.7 0.739097
Target:  5'- aGGAGGCGGcgugcuGCGAccucgacucggAGCUGGCGcGGAUc -3'
miRNA:   3'- -CCUCCGCUc-----CGCU-----------UUGACCGC-CCUAu -5'
15972 5' -57.2 NC_004065.1 + 209563 0.7 0.7485
Target:  5'- aGGAGGCccGGCcggcuGCUGGCGGGcGUGc -3'
miRNA:   3'- -CCUCCGcuCCGcuu--UGACCGCCC-UAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.