Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15972 | 5' | -57.2 | NC_004065.1 | + | 62382 | 0.7 | 0.767011 |
Target: 5'- cGGGGGUGGuggcGGCGggGgUGGCGGc--- -3' miRNA: 3'- -CCUCCGCU----CCGCuuUgACCGCCcuau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 150337 | 0.69 | 0.78418 |
Target: 5'- cGAGGgGAGGgGAcgacagcGACgGGgGGGAUAg -3' miRNA: 3'- cCUCCgCUCCgCU-------UUGaCCgCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 152306 | 0.69 | 0.785072 |
Target: 5'- --cGGCGGcGGCGguGCcGGCGGGGa- -3' miRNA: 3'- ccuCCGCU-CCGCuuUGaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 101818 | 0.69 | 0.797411 |
Target: 5'- --cGGCGGuGGCGGGACUGGCacuaguaaugcucgcGGGGg- -3' miRNA: 3'- ccuCCGCU-CCGCUUUGACCG---------------CCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 68531 | 0.69 | 0.802616 |
Target: 5'- cGGAGGCcgagGAGGCG--GC-GGCGGaGGUGa -3' miRNA: 3'- -CCUCCG----CUCCGCuuUGaCCGCC-CUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 141981 | 0.69 | 0.802616 |
Target: 5'- cGGAGGCGAcGGCGAugacGACgauaccgcGGCGGa--- -3' miRNA: 3'- -CCUCCGCU-CCGCU----UUGa-------CCGCCcuau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 58425 | 0.69 | 0.811175 |
Target: 5'- -aAGGCGAuGCGGuuGCUGGCGGuGAa- -3' miRNA: 3'- ccUCCGCUcCGCUu-UGACCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 197476 | 0.69 | 0.811175 |
Target: 5'- uGGGGUGGGGgGggGugaUGGUGGGGg- -3' miRNA: 3'- cCUCCGCUCCgCuuUg--ACCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 177485 | 0.69 | 0.819582 |
Target: 5'- cGGGGGCGcacGGCGggGCcGcCGGGGg- -3' miRNA: 3'- -CCUCCGCu--CCGCuuUGaCcGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 104680 | 0.68 | 0.827828 |
Target: 5'- cGGAGGgucaCGAGGCGAcGCUGcaggugcuGCGGGc-- -3' miRNA: 3'- -CCUCC----GCUCCGCUuUGAC--------CGCCCuau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 151401 | 0.68 | 0.827828 |
Target: 5'- gGGuGGCgGAGGCGGGuc-GGuCGGGGUGg -3' miRNA: 3'- -CCuCCG-CUCCGCUUugaCC-GCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 30133 | 0.68 | 0.828644 |
Target: 5'- gGGAgGGCGGguGGCGGAGCgaccggacccagccGCGGGAUGu -3' miRNA: 3'- -CCU-CCGCU--CCGCUUUGac------------CGCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 74848 | 0.68 | 0.835908 |
Target: 5'- aGGGGCGcAGGuUGAGGC-GGCGGuGGUAg -3' miRNA: 3'- cCUCCGC-UCC-GCUUUGaCCGCC-CUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 136485 | 0.68 | 0.843813 |
Target: 5'- gGGAGcCGAGGCcgguagccggGGAGCUGGUccGGGAa- -3' miRNA: 3'- -CCUCcGCUCCG----------CUUUGACCG--CCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 127477 | 0.68 | 0.859077 |
Target: 5'- gGGAGGUGgucGGGCGc----GGCGGGAg- -3' miRNA: 3'- -CCUCCGC---UCCGCuuugaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 38525 | 0.68 | 0.859077 |
Target: 5'- uGGAGcCGAGGCacGAGAacCUGGgGGGAc- -3' miRNA: 3'- -CCUCcGCUCCG--CUUU--GACCgCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 129998 | 0.67 | 0.872865 |
Target: 5'- cGGGGGCggcggacGAGGCGAuGCUguacGGCGGcGGc- -3' miRNA: 3'- -CCUCCG-------CUCCGCUuUGA----CCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 98393 | 0.67 | 0.879831 |
Target: 5'- uGGuGGCGAGGagggcgaUGAGAgUGGCGGcGGc- -3' miRNA: 3'- -CCuCCGCUCC-------GCUUUgACCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 194214 | 0.67 | 0.880516 |
Target: 5'- uGGAGaCGGGGaucccuUUGGCGGGAUGg -3' miRNA: 3'- -CCUCcGCUCCgcuuu-GACCGCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 203610 | 0.67 | 0.880516 |
Target: 5'- cGGAGGCcgccgccgccGuGGCGGAguuGgaGGCGGGGg- -3' miRNA: 3'- -CCUCCG----------CuCCGCUU---UgaCCGCCCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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