miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 129998 0.67 0.872865
Target:  5'- cGGGGGCggcggacGAGGCGAuGCUguacGGCGGcGGc- -3'
miRNA:   3'- -CCUCCG-------CUCCGCUuUGA----CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 127477 0.68 0.859077
Target:  5'- gGGAGGUGgucGGGCGc----GGCGGGAg- -3'
miRNA:   3'- -CCUCCGC---UCCGCuuugaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 38525 0.68 0.859077
Target:  5'- uGGAGcCGAGGCacGAGAacCUGGgGGGAc- -3'
miRNA:   3'- -CCUCcGCUCCG--CUUU--GACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 136485 0.68 0.843813
Target:  5'- gGGAGcCGAGGCcgguagccggGGAGCUGGUccGGGAa- -3'
miRNA:   3'- -CCUCcGCUCCG----------CUUUGACCG--CCCUau -5'
15972 5' -57.2 NC_004065.1 + 74848 0.68 0.835908
Target:  5'- aGGGGCGcAGGuUGAGGC-GGCGGuGGUAg -3'
miRNA:   3'- cCUCCGC-UCC-GCUUUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 30133 0.68 0.828644
Target:  5'- gGGAgGGCGGguGGCGGAGCgaccggacccagccGCGGGAUGu -3'
miRNA:   3'- -CCU-CCGCU--CCGCUUUGac------------CGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 151401 0.68 0.827828
Target:  5'- gGGuGGCgGAGGCGGGuc-GGuCGGGGUGg -3'
miRNA:   3'- -CCuCCG-CUCCGCUUugaCC-GCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 104680 0.68 0.827828
Target:  5'- cGGAGGgucaCGAGGCGAcGCUGcaggugcuGCGGGc-- -3'
miRNA:   3'- -CCUCC----GCUCCGCUuUGAC--------CGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 177485 0.69 0.819582
Target:  5'- cGGGGGCGcacGGCGggGCcGcCGGGGg- -3'
miRNA:   3'- -CCUCCGCu--CCGCuuUGaCcGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 197476 0.69 0.811175
Target:  5'- uGGGGUGGGGgGggGugaUGGUGGGGg- -3'
miRNA:   3'- cCUCCGCUCCgCuuUg--ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 58425 0.69 0.811175
Target:  5'- -aAGGCGAuGCGGuuGCUGGCGGuGAa- -3'
miRNA:   3'- ccUCCGCUcCGCUu-UGACCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 68531 0.69 0.802616
Target:  5'- cGGAGGCcgagGAGGCG--GC-GGCGGaGGUGa -3'
miRNA:   3'- -CCUCCG----CUCCGCuuUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 141981 0.69 0.802616
Target:  5'- cGGAGGCGAcGGCGAugacGACgauaccgcGGCGGa--- -3'
miRNA:   3'- -CCUCCGCU-CCGCU----UUGa-------CCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 101818 0.69 0.797411
Target:  5'- --cGGCGGuGGCGGGACUGGCacuaguaaugcucgcGGGGg- -3'
miRNA:   3'- ccuCCGCU-CCGCUUUGACCG---------------CCCUau -5'
15972 5' -57.2 NC_004065.1 + 152306 0.69 0.785072
Target:  5'- --cGGCGGcGGCGguGCcGGCGGGGa- -3'
miRNA:   3'- ccuCCGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 150337 0.69 0.78418
Target:  5'- cGAGGgGAGGgGAcgacagcGACgGGgGGGAUAg -3'
miRNA:   3'- cCUCCgCUCCgCU-------UUGaCCgCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 62382 0.7 0.767011
Target:  5'- cGGGGGUGGuggcGGCGggGgUGGCGGc--- -3'
miRNA:   3'- -CCUCCGCU----CCGCuuUgACCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 209563 0.7 0.7485
Target:  5'- aGGAGGCccGGCcggcuGCUGGCGGGcGUGc -3'
miRNA:   3'- -CCUCCGcuCCGcuu--UGACCGCCC-UAU- -5'
15972 5' -57.2 NC_004065.1 + 77010 0.7 0.739097
Target:  5'- aGGAGGCGGcgugcuGCGAccucgacucggAGCUGGCGcGGAUc -3'
miRNA:   3'- -CCUCCGCUc-----CGCU-----------UUGACCGC-CCUAu -5'
15972 5' -57.2 NC_004065.1 + 4371 0.7 0.739097
Target:  5'- uGGAGcGCGAcGGCG--GC-GGCGGGAg- -3'
miRNA:   3'- -CCUC-CGCU-CCGCuuUGaCCGCCCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.