miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 657 0.7 0.729606
Target:  5'- gGGGGGCGGguauaauacccGGgGAGuAUUGGCGGGGc- -3'
miRNA:   3'- -CCUCCGCU-----------CCgCUU-UGACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 4371 0.7 0.739097
Target:  5'- uGGAGcGCGAcGGCG--GC-GGCGGGAg- -3'
miRNA:   3'- -CCUC-CGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 18928 0.66 0.923138
Target:  5'- ----cCGAGGCGAGAC-GGCGGGc-- -3'
miRNA:   3'- ccuccGCUCCGCUUUGaCCGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 19437 0.67 0.885923
Target:  5'- cGGAGGCaccgcgcugcuGGCGAugAGCgUGGUGGGGa- -3'
miRNA:   3'- -CCUCCGcu---------CCGCU--UUG-ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 23607 0.7 0.720036
Target:  5'- aGGcGGUGAGGCG-GGCaGGCGGGu-- -3'
miRNA:   3'- -CCuCCGCUCCGCuUUGaCCGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 28962 0.71 0.714259
Target:  5'- cGGAGGCGGGGCGcuacGACacggaucagucuccGGCGGcGGUGg -3'
miRNA:   3'- -CCUCCGCUCCGCu---UUGa-------------CCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 30133 0.68 0.828644
Target:  5'- gGGAgGGCGGguGGCGGAGCgaccggacccagccGCGGGAUGu -3'
miRNA:   3'- -CCU-CCGCU--CCGCUUUGac------------CGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 31093 0.66 0.927831
Target:  5'- cGGGcGGCGAucagaacgcccGGCGGcgcgcgaucgagaGGCUGGaCGGGAa- -3'
miRNA:   3'- -CCU-CCGCU-----------CCGCU-------------UUGACC-GCCCUau -5'
15972 5' -57.2 NC_004065.1 + 34389 1.09 0.003566
Target:  5'- gGGAGGCGAGGCGAAACUGGCGGGAUAa -3'
miRNA:   3'- -CCUCCGCUCCGCUUUGACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 35527 0.66 0.923138
Target:  5'- cGGAGGUGGGGaCGGGcACggucGGuuGGAUAa -3'
miRNA:   3'- -CCUCCGCUCC-GCUU-UGa---CCgcCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 38525 0.68 0.859077
Target:  5'- uGGAGcCGAGGCacGAGAacCUGGgGGGAc- -3'
miRNA:   3'- -CCUCcGCUCCG--CUUU--GACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 48107 0.66 0.923138
Target:  5'- cGGcGGCGGuGGCGGcGGC-GGUGGGAc- -3'
miRNA:   3'- -CCuCCGCU-CCGCU-UUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 58425 0.69 0.811175
Target:  5'- -aAGGCGAuGCGGuuGCUGGCGGuGAa- -3'
miRNA:   3'- ccUCCGCUcCGCUu-UGACCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 59141 0.66 0.923138
Target:  5'- cGAGcGCGAGGCGAcGAC-GGCGaGAg- -3'
miRNA:   3'- cCUC-CGCUCCGCU-UUGaCCGCcCUau -5'
15972 5' -57.2 NC_004065.1 + 62382 0.7 0.767011
Target:  5'- cGGGGGUGGuggcGGCGggGgUGGCGGc--- -3'
miRNA:   3'- -CCUCCGCU----CCGCuuUgACCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 68531 0.69 0.802616
Target:  5'- cGGAGGCcgagGAGGCG--GC-GGCGGaGGUGa -3'
miRNA:   3'- -CCUCCG----CUCCGCuuUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 68891 0.66 0.912059
Target:  5'- aGAcGGcCGAGGUGAAGCUGGaGGuGAc- -3'
miRNA:   3'- cCU-CC-GCUCCGCUUUGACCgCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 71951 0.66 0.932832
Target:  5'- cGGAGGCGAcgccgccGGUGGAGCcgGGCagcccGGAg- -3'
miRNA:   3'- -CCUCCGCU-------CCGCUUUGa-CCGc----CCUau -5'
15972 5' -57.2 NC_004065.1 + 74848 0.68 0.835908
Target:  5'- aGGGGCGcAGGuUGAGGC-GGCGGuGGUAg -3'
miRNA:   3'- cCUCCGC-UCC-GCUUUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 74916 0.71 0.709427
Target:  5'- aGGaAGGCGAcgcaGGgGGAGCUGGCcugguugggaaugGGGAUGc -3'
miRNA:   3'- -CC-UCCGCU----CCgCUUUGACCG-------------CCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.