miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 75650 0.67 0.900092
Target:  5'- aGGAGGUGGaaguggaggucGGCGAGGCggccGCGGGcUGa -3'
miRNA:   3'- -CCUCCGCU-----------CCGCUUUGac--CGCCCuAU- -5'
15972 5' -57.2 NC_004065.1 + 75789 0.72 0.661419
Target:  5'- cGGucGGCGAGGgGGAGC-GGCGGcGAg- -3'
miRNA:   3'- -CCu-CCGCUCCgCUUUGaCCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 77010 0.7 0.739097
Target:  5'- aGGAGGCGGcgugcuGCGAccucgacucggAGCUGGCGcGGAUc -3'
miRNA:   3'- -CCUCCGCUc-----CGCU-----------UUGACCGC-CCUAu -5'
15972 5' -57.2 NC_004065.1 + 98393 0.67 0.879831
Target:  5'- uGGuGGCGAGGagggcgaUGAGAgUGGCGGcGGc- -3'
miRNA:   3'- -CCuCCGCUCC-------GCUUUgACCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 101818 0.69 0.797411
Target:  5'- --cGGCGGuGGCGGGACUGGCacuaguaaugcucgcGGGGg- -3'
miRNA:   3'- ccuCCGCU-CCGCUUUGACCG---------------CCCUau -5'
15972 5' -57.2 NC_004065.1 + 103706 0.67 0.89378
Target:  5'- uGGGcGGCGGGGagcgcCUGGCGGGcGUGa -3'
miRNA:   3'- -CCU-CCGCUCCgcuuuGACCGCCC-UAU- -5'
15972 5' -57.2 NC_004065.1 + 104680 0.68 0.827828
Target:  5'- cGGAGGgucaCGAGGCGAcGCUGcaggugcuGCGGGc-- -3'
miRNA:   3'- -CCUCC----GCUCCGCUuUGAC--------CGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 109112 0.77 0.366901
Target:  5'- cGGAGGagaGGGGaCGGAGgUGGCGGGGa- -3'
miRNA:   3'- -CCUCCg--CUCC-GCUUUgACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 117191 0.66 0.905586
Target:  5'- uGGGGC-AGGCGuuGCgccaggcaggugaUGGCGGGGa- -3'
miRNA:   3'- cCUCCGcUCCGCuuUG-------------ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 120556 0.72 0.661419
Target:  5'- cGGcGGCGGucGGCGcGAGCgGGCGGGAc- -3'
miRNA:   3'- -CCuCCGCU--CCGC-UUUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 127477 0.68 0.859077
Target:  5'- gGGAGGUGgucGGGCGc----GGCGGGAg- -3'
miRNA:   3'- -CCUCCGC---UCCGCuuugaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 129998 0.67 0.872865
Target:  5'- cGGGGGCggcggacGAGGCGAuGCUguacGGCGGcGGc- -3'
miRNA:   3'- -CCUCCG-------CUCCGCUuUGA----CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 136485 0.68 0.843813
Target:  5'- gGGAGcCGAGGCcgguagccggGGAGCUGGUccGGGAa- -3'
miRNA:   3'- -CCUCcGCUCCG----------CUUUGACCG--CCCUau -5'
15972 5' -57.2 NC_004065.1 + 139848 0.71 0.681131
Target:  5'- gGGAGGCG-GGCGAcGGCggaGGCGGcGGa- -3'
miRNA:   3'- -CCUCCGCuCCGCU-UUGa--CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 141981 0.69 0.802616
Target:  5'- cGGAGGCGAcGGCGAugacGACgauaccgcGGCGGa--- -3'
miRNA:   3'- -CCUCCGCU-CCGCU----UUGa-------CCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 143336 0.75 0.477408
Target:  5'- cGGGGGCGgcggcaGGGCGAGggaacACUGGgGGGGa- -3'
miRNA:   3'- -CCUCCGC------UCCGCUU-----UGACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 145716 0.72 0.651526
Target:  5'- aGGAGGaGAGGUcgguGGAGgaGGCGGGAg- -3'
miRNA:   3'- -CCUCCgCUCCG----CUUUgaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 148868 0.71 0.700692
Target:  5'- aGGAGGCGGcGGCGggG--GGCGaGGGg- -3'
miRNA:   3'- -CCUCCGCU-CCGCuuUgaCCGC-CCUau -5'
15972 5' -57.2 NC_004065.1 + 150337 0.69 0.78418
Target:  5'- cGAGGgGAGGgGAcgacagcGACgGGgGGGAUAg -3'
miRNA:   3'- cCUCCgCUCCgCU-------UUGaCCgCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 151401 0.68 0.827828
Target:  5'- gGGuGGCgGAGGCGGGuc-GGuCGGGGUGg -3'
miRNA:   3'- -CCuCCG-CUCCGCUUugaCC-GCCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.