miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 223885 0.67 0.89378
Target:  5'- cGGAGaugaCGAGuaGGAGCUGGCGGcGGc- -3'
miRNA:   3'- -CCUCc---GCUCcgCUUUGACCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 222759 0.66 0.927831
Target:  5'- aGGAGGgGAGGCGGAAucagacacauagcCUGGCu----- -3'
miRNA:   3'- -CCUCCgCUCCGCUUU-------------GACCGcccuau -5'
15972 5' -57.2 NC_004065.1 + 221845 0.74 0.543291
Target:  5'- uGGGGCGucGGGUGGGugguGCUGGUGGGAa- -3'
miRNA:   3'- cCUCCGC--UCCGCUU----UGACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 214204 0.71 0.710395
Target:  5'- gGGGGGacCGGGGUGAucauuuguaGACgGGCGGGAc- -3'
miRNA:   3'- -CCUCC--GCUCCGCU---------UUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 211404 0.74 0.543291
Target:  5'- cGGAGGCGGGG-GAAACgugggccugGGCGGuGAc- -3'
miRNA:   3'- -CCUCCGCUCCgCUUUGa--------CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 209563 0.7 0.7485
Target:  5'- aGGAGGCccGGCcggcuGCUGGCGGGcGUGc -3'
miRNA:   3'- -CCUCCGcuCCGcuu--UGACCGCCC-UAU- -5'
15972 5' -57.2 NC_004065.1 + 208964 0.66 0.93332
Target:  5'- cGGAcacGGUGuGGCGAGAC-GG-GGGAg- -3'
miRNA:   3'- -CCU---CCGCuCCGCUUUGaCCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 203610 0.67 0.880516
Target:  5'- cGGAGGCcgccgccgccGuGGCGGAguuGgaGGCGGGGg- -3'
miRNA:   3'- -CCUCCG----------CuCCGCUU---UgaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 201313 0.73 0.572463
Target:  5'- aGGAGGaGAGGaUGAuGgUGGCGGGGUGc -3'
miRNA:   3'- -CCUCCgCUCC-GCUuUgACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 197476 0.69 0.811175
Target:  5'- uGGGGUGGGGgGggGugaUGGUGGGGg- -3'
miRNA:   3'- cCUCCGCUCCgCuuUg--ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 194214 0.67 0.880516
Target:  5'- uGGAGaCGGGGaucccuUUGGCGGGAUGg -3'
miRNA:   3'- -CCUCcGCUCCgcuuu-GACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 192728 0.72 0.621789
Target:  5'- cGGGGGCucuuGAGGCcgccGAAACUGGCgcucuucucuGGGGUGg -3'
miRNA:   3'- -CCUCCG----CUCCG----CUUUGACCG----------CCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 185445 0.67 0.887254
Target:  5'- aGGAGGaCGAGGagugaugaUGAAGgUGGUGGuGGUGc -3'
miRNA:   3'- -CCUCC-GCUCC--------GCUUUgACCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 185399 0.67 0.887254
Target:  5'- uGAGGCGA-GUGAuGgUGGUGGGGa- -3'
miRNA:   3'- cCUCCGCUcCGCUuUgACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 177485 0.69 0.819582
Target:  5'- cGGGGGCGcacGGCGggGCcGcCGGGGg- -3'
miRNA:   3'- -CCUCCGCu--CCGCuuUGaCcGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 172723 0.66 0.912059
Target:  5'- uGAGGCGuauGCGAAugaGCUGGgCGGGu-- -3'
miRNA:   3'- cCUCCGCuc-CGCUU---UGACC-GCCCuau -5'
15972 5' -57.2 NC_004065.1 + 152306 0.69 0.785072
Target:  5'- --cGGCGGcGGCGguGCcGGCGGGGa- -3'
miRNA:   3'- ccuCCGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 151401 0.68 0.827828
Target:  5'- gGGuGGCgGAGGCGGGuc-GGuCGGGGUGg -3'
miRNA:   3'- -CCuCCG-CUCCGCUUugaCC-GCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 150337 0.69 0.78418
Target:  5'- cGAGGgGAGGgGAcgacagcGACgGGgGGGAUAg -3'
miRNA:   3'- cCUCCgCUCCgCU-------UUGaCCgCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 148868 0.71 0.700692
Target:  5'- aGGAGGCGGcGGCGggG--GGCGaGGGg- -3'
miRNA:   3'- -CCUCCGCU-CCGCuuUgaCCGC-CCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.