Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15972 | 5' | -57.2 | NC_004065.1 | + | 194214 | 0.67 | 0.880516 |
Target: 5'- uGGAGaCGGGGaucccuUUGGCGGGAUGg -3' miRNA: 3'- -CCUCcGCUCCgcuuu-GACCGCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 152306 | 0.69 | 0.785072 |
Target: 5'- --cGGCGGcGGCGguGCcGGCGGGGa- -3' miRNA: 3'- ccuCCGCU-CCGCuuUGaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 101818 | 0.69 | 0.797411 |
Target: 5'- --cGGCGGuGGCGGGACUGGCacuaguaaugcucgcGGGGg- -3' miRNA: 3'- ccuCCGCU-CCGCUUUGACCG---------------CCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 141981 | 0.69 | 0.802616 |
Target: 5'- cGGAGGCGAcGGCGAugacGACgauaccgcGGCGGa--- -3' miRNA: 3'- -CCUCCGCU-CCGCU----UUGa-------CCGCCcuau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 197476 | 0.69 | 0.811175 |
Target: 5'- uGGGGUGGGGgGggGugaUGGUGGGGg- -3' miRNA: 3'- cCUCCGCUCCgCuuUg--ACCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 58425 | 0.69 | 0.811175 |
Target: 5'- -aAGGCGAuGCGGuuGCUGGCGGuGAa- -3' miRNA: 3'- ccUCCGCUcCGCUu-UGACCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 30133 | 0.68 | 0.828644 |
Target: 5'- gGGAgGGCGGguGGCGGAGCgaccggacccagccGCGGGAUGu -3' miRNA: 3'- -CCU-CCGCU--CCGCUUUGac------------CGCCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 74848 | 0.68 | 0.835908 |
Target: 5'- aGGGGCGcAGGuUGAGGC-GGCGGuGGUAg -3' miRNA: 3'- cCUCCGC-UCC-GCUUUGaCCGCC-CUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 98393 | 0.67 | 0.879831 |
Target: 5'- uGGuGGCGAGGagggcgaUGAGAgUGGCGGcGGc- -3' miRNA: 3'- -CCuCCGCUCC-------GCUUUgACCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 62382 | 0.7 | 0.767011 |
Target: 5'- cGGGGGUGGuggcGGCGggGgUGGCGGc--- -3' miRNA: 3'- -CCUCCGCU----CCGCuuUgACCGCCcuau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 77010 | 0.7 | 0.739097 |
Target: 5'- aGGAGGCGGcgugcuGCGAccucgacucggAGCUGGCGcGGAUc -3' miRNA: 3'- -CCUCCGCUc-----CGCU-----------UUGACCGC-CCUAu -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 657 | 0.7 | 0.729606 |
Target: 5'- gGGGGGCGGguauaauacccGGgGAGuAUUGGCGGGGc- -3' miRNA: 3'- -CCUCCGCU-----------CCgCUU-UGACCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 109112 | 0.77 | 0.366901 |
Target: 5'- cGGAGGagaGGGGaCGGAGgUGGCGGGGa- -3' miRNA: 3'- -CCUCCg--CUCC-GCUUUgACCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 221845 | 0.74 | 0.543291 |
Target: 5'- uGGGGCGucGGGUGGGugguGCUGGUGGGAa- -3' miRNA: 3'- cCUCCGC--UCCGCUU----UGACCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 145716 | 0.72 | 0.651526 |
Target: 5'- aGGAGGaGAGGUcgguGGAGgaGGCGGGAg- -3' miRNA: 3'- -CCUCCgCUCCG----CUUUgaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 75789 | 0.72 | 0.661419 |
Target: 5'- cGGucGGCGAGGgGGAGC-GGCGGcGAg- -3' miRNA: 3'- -CCu-CCGCUCCgCUUUGaCCGCC-CUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 120556 | 0.72 | 0.661419 |
Target: 5'- cGGcGGCGGucGGCGcGAGCgGGCGGGAc- -3' miRNA: 3'- -CCuCCGCU--CCGC-UUUGaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 74916 | 0.71 | 0.709427 |
Target: 5'- aGGaAGGCGAcgcaGGgGGAGCUGGCcugguugggaaugGGGAUGc -3' miRNA: 3'- -CC-UCCGCU----CCgCUUUGACCG-------------CCCUAU- -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 214204 | 0.71 | 0.710395 |
Target: 5'- gGGGGGacCGGGGUGAucauuuguaGACgGGCGGGAc- -3' miRNA: 3'- -CCUCC--GCUCCGCU---------UUGaCCGCCCUau -5' |
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15972 | 5' | -57.2 | NC_004065.1 | + | 23607 | 0.7 | 0.720036 |
Target: 5'- aGGcGGUGAGGCG-GGCaGGCGGGu-- -3' miRNA: 3'- -CCuCCGCUCCGCuUUGaCCGCCCuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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