miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 143336 0.75 0.477408
Target:  5'- cGGGGGCGgcggcaGGGCGAGggaacACUGGgGGGGa- -3'
miRNA:   3'- -CCUCCGC------UCCGCUU-----UGACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 129998 0.67 0.872865
Target:  5'- cGGGGGCggcggacGAGGCGAuGCUguacGGCGGcGGc- -3'
miRNA:   3'- -CCUCCG-------CUCCGCUuUGA----CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 185445 0.67 0.887254
Target:  5'- aGGAGGaCGAGGagugaugaUGAAGgUGGUGGuGGUGc -3'
miRNA:   3'- -CCUCC-GCUCC--------GCUUUgACCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 208964 0.66 0.93332
Target:  5'- cGGAcacGGUGuGGCGAGAC-GG-GGGAg- -3'
miRNA:   3'- -CCU---CCGCuCCGCUUUGaCCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 139848 0.71 0.681131
Target:  5'- gGGAGGCG-GGCGAcGGCggaGGCGGcGGa- -3'
miRNA:   3'- -CCUCCGCuCCGCU-UUGa--CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 148868 0.71 0.700692
Target:  5'- aGGAGGCGGcGGCGggG--GGCGaGGGg- -3'
miRNA:   3'- -CCUCCGCU-CCGCuuUgaCCGC-CCUau -5'
15972 5' -57.2 NC_004065.1 + 4371 0.7 0.739097
Target:  5'- uGGAGcGCGAcGGCG--GC-GGCGGGAg- -3'
miRNA:   3'- -CCUC-CGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 209563 0.7 0.7485
Target:  5'- aGGAGGCccGGCcggcuGCUGGCGGGcGUGc -3'
miRNA:   3'- -CCUCCGcuCCGcuu--UGACCGCCC-UAU- -5'
15972 5' -57.2 NC_004065.1 + 177485 0.69 0.819582
Target:  5'- cGGGGGCGcacGGCGggGCcGcCGGGGg- -3'
miRNA:   3'- -CCUCCGCu--CCGCuuUGaCcGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 127477 0.68 0.859077
Target:  5'- gGGAGGUGgucGGGCGc----GGCGGGAg- -3'
miRNA:   3'- -CCUCCGC---UCCGCuuugaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 104680 0.68 0.827828
Target:  5'- cGGAGGgucaCGAGGCGAcGCUGcaggugcuGCGGGc-- -3'
miRNA:   3'- -CCUCC----GCUCCGCUuUGAC--------CGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 68531 0.69 0.802616
Target:  5'- cGGAGGCcgagGAGGCG--GC-GGCGGaGGUGa -3'
miRNA:   3'- -CCUCCG----CUCCGCuuUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 211404 0.74 0.543291
Target:  5'- cGGAGGCGGGG-GAAACgugggccugGGCGGuGAc- -3'
miRNA:   3'- -CCUCCGCUCCgCUUUGa--------CCGCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 136485 0.68 0.843813
Target:  5'- gGGAGcCGAGGCcgguagccggGGAGCUGGUccGGGAa- -3'
miRNA:   3'- -CCUCcGCUCCG----------CUUUGACCG--CCCUau -5'
15972 5' -57.2 NC_004065.1 + 201313 0.73 0.572463
Target:  5'- aGGAGGaGAGGaUGAuGgUGGCGGGGUGc -3'
miRNA:   3'- -CCUCCgCUCC-GCUuUgACCGCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 150337 0.69 0.78418
Target:  5'- cGAGGgGAGGgGAcgacagcGACgGGgGGGAUAg -3'
miRNA:   3'- cCUCCgCUCCgCU-------UUGaCCgCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 38525 0.68 0.859077
Target:  5'- uGGAGcCGAGGCacGAGAacCUGGgGGGAc- -3'
miRNA:   3'- -CCUCcGCUCCG--CUUU--GACCgCCCUau -5'
15972 5' -57.2 NC_004065.1 + 203610 0.67 0.880516
Target:  5'- cGGAGGCcgccgccgccGuGGCGGAguuGgaGGCGGGGg- -3'
miRNA:   3'- -CCUCCG----------CuCCGCUU---UgaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 192728 0.72 0.621789
Target:  5'- cGGGGGCucuuGAGGCcgccGAAACUGGCgcucuucucuGGGGUGg -3'
miRNA:   3'- -CCUCCG----CUCCG----CUUUGACCG----------CCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 28962 0.71 0.714259
Target:  5'- cGGAGGCGGGGCGcuacGACacggaucagucuccGGCGGcGGUGg -3'
miRNA:   3'- -CCUCCGCUCCGCu---UUGa-------------CCGCC-CUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.