miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 5' -57.2 NC_004065.1 + 104680 0.68 0.827828
Target:  5'- cGGAGGgucaCGAGGCGAcGCUGcaggugcuGCGGGc-- -3'
miRNA:   3'- -CCUCC----GCUCCGCUuUGAC--------CGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 18928 0.66 0.923138
Target:  5'- ----cCGAGGCGAGAC-GGCGGGc-- -3'
miRNA:   3'- ccuccGCUCCGCUUUGaCCGCCCuau -5'
15972 5' -57.2 NC_004065.1 + 185445 0.67 0.887254
Target:  5'- aGGAGGaCGAGGagugaugaUGAAGgUGGUGGuGGUGc -3'
miRNA:   3'- -CCUCC-GCUCC--------GCUUUgACCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 151401 0.68 0.827828
Target:  5'- gGGuGGCgGAGGCGGGuc-GGuCGGGGUGg -3'
miRNA:   3'- -CCuCCG-CUCCGCUUugaCC-GCCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 177485 0.69 0.819582
Target:  5'- cGGGGGCGcacGGCGggGCcGcCGGGGg- -3'
miRNA:   3'- -CCUCCGCu--CCGCuuUGaCcGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 68531 0.69 0.802616
Target:  5'- cGGAGGCcgagGAGGCG--GC-GGCGGaGGUGa -3'
miRNA:   3'- -CCUCCG----CUCCGCuuUGaCCGCC-CUAU- -5'
15972 5' -57.2 NC_004065.1 + 74916 0.71 0.709427
Target:  5'- aGGaAGGCGAcgcaGGgGGAGCUGGCcugguugggaaugGGGAUGc -3'
miRNA:   3'- -CC-UCCGCU----CCgCUUUGACCG-------------CCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 221845 0.74 0.543291
Target:  5'- uGGGGCGucGGGUGGGugguGCUGGUGGGAa- -3'
miRNA:   3'- cCUCCGC--UCCGCUU----UGACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 222759 0.66 0.927831
Target:  5'- aGGAGGgGAGGCGGAAucagacacauagcCUGGCu----- -3'
miRNA:   3'- -CCUCCgCUCCGCUUU-------------GACCGcccuau -5'
15972 5' -57.2 NC_004065.1 + 48107 0.66 0.923138
Target:  5'- cGGcGGCGGuGGCGGcGGC-GGUGGGAc- -3'
miRNA:   3'- -CCuCCGCU-CCGCU-UUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 141981 0.69 0.802616
Target:  5'- cGGAGGCGAcGGCGAugacGACgauaccgcGGCGGa--- -3'
miRNA:   3'- -CCUCCGCU-CCGCU----UUGa-------CCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 101818 0.69 0.797411
Target:  5'- --cGGCGGuGGCGGGACUGGCacuaguaaugcucgcGGGGg- -3'
miRNA:   3'- ccuCCGCU-CCGCUUUGACCG---------------CCCUau -5'
15972 5' -57.2 NC_004065.1 + 152306 0.69 0.785072
Target:  5'- --cGGCGGcGGCGguGCcGGCGGGGa- -3'
miRNA:   3'- ccuCCGCU-CCGCuuUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 62382 0.7 0.767011
Target:  5'- cGGGGGUGGuggcGGCGggGgUGGCGGc--- -3'
miRNA:   3'- -CCUCCGCU----CCGCuuUgACCGCCcuau -5'
15972 5' -57.2 NC_004065.1 + 120556 0.72 0.661419
Target:  5'- cGGcGGCGGucGGCGcGAGCgGGCGGGAc- -3'
miRNA:   3'- -CCuCCGCU--CCGC-UUUGaCCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 117191 0.66 0.905586
Target:  5'- uGGGGC-AGGCGuuGCgccaggcaggugaUGGCGGGGa- -3'
miRNA:   3'- cCUCCGcUCCGCuuUG-------------ACCGCCCUau -5'
15972 5' -57.2 NC_004065.1 + 68891 0.66 0.912059
Target:  5'- aGAcGGcCGAGGUGAAGCUGGaGGuGAc- -3'
miRNA:   3'- cCU-CC-GCUCCGCUUUGACCgCC-CUau -5'
15972 5' -57.2 NC_004065.1 + 172723 0.66 0.912059
Target:  5'- uGAGGCGuauGCGAAugaGCUGGgCGGGu-- -3'
miRNA:   3'- cCUCCGCuc-CGCUU---UGACC-GCCCuau -5'
15972 5' -57.2 NC_004065.1 + 35527 0.66 0.923138
Target:  5'- cGGAGGUGGGGaCGGGcACggucGGuuGGAUAa -3'
miRNA:   3'- -CCUCCGCUCC-GCUU-UGa---CCgcCCUAU- -5'
15972 5' -57.2 NC_004065.1 + 59141 0.66 0.923138
Target:  5'- cGAGcGCGAGGCGAcGAC-GGCGaGAg- -3'
miRNA:   3'- cCUC-CGCUCCGCU-UUGaCCGCcCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.