miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15974 5' -60.6 NC_004065.1 + 113190 0.66 0.818201
Target:  5'- aGGCGCAuggacgacaGCGGCUgCCCCgacagcagcUUCGuCGUGa -3'
miRNA:   3'- gUCGCGU---------UGUCGAgGGGG---------GAGC-GCAC- -5'
15974 5' -60.6 NC_004065.1 + 18863 0.66 0.817381
Target:  5'- gAGUGCGACAucccggcacgcccGCUCCCCCC-CGaaCGg- -3'
miRNA:   3'- gUCGCGUUGU-------------CGAGGGGGGaGC--GCac -5'
15974 5' -60.6 NC_004065.1 + 63498 0.66 0.809928
Target:  5'- -cGCGCAGCcaggugcggauGGC-CUCgCCCUCGCGg- -3'
miRNA:   3'- guCGCGUUG-----------UCGaGGG-GGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 79561 0.66 0.809928
Target:  5'- gCGGCGCAGCGGCg-CUUCCUgGCcgagGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGAgCG----CAC- -5'
15974 5' -60.6 NC_004065.1 + 4644 0.66 0.809928
Target:  5'- uCAGCGC--CAGCgCCCCCgC-CGCGg- -3'
miRNA:   3'- -GUCGCGuuGUCGaGGGGG-GaGCGCac -5'
15974 5' -60.6 NC_004065.1 + 148835 0.66 0.809928
Target:  5'- -uGCGCGuuggggauCAGCUCUCCCgaCUCgGUGUGg -3'
miRNA:   3'- guCGCGUu-------GUCGAGGGGG--GAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 128169 0.66 0.809928
Target:  5'- gCGGCgGCGAUAGCgCCCCCgaCGCc-- -3'
miRNA:   3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5'
15974 5' -60.6 NC_004065.1 + 196359 0.66 0.801509
Target:  5'- --uCGCAGCGGCcCUCCCCgCGCGc- -3'
miRNA:   3'- gucGCGUUGUCGaGGGGGGaGCGCac -5'
15974 5' -60.6 NC_004065.1 + 150808 0.66 0.792952
Target:  5'- -uGCGCGAUguccaGGCUCaCCCCgUaCGCGUc -3'
miRNA:   3'- guCGCGUUG-----UCGAG-GGGGgA-GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 169129 0.66 0.792952
Target:  5'- gCGGC-CAGCAGUUCCCgagaCgCUCGCGa- -3'
miRNA:   3'- -GUCGcGUUGUCGAGGGg---G-GAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 150615 0.66 0.792952
Target:  5'- gCAGCGCGGCuauGCUgUCCacgaUCGUGUGu -3'
miRNA:   3'- -GUCGCGUUGu--CGAgGGGgg--AGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 147648 0.66 0.784263
Target:  5'- gAGCcCu---GCUCCCCCUUCaGCGUGu -3'
miRNA:   3'- gUCGcGuuguCGAGGGGGGAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 188937 0.66 0.784263
Target:  5'- uGGCGCucauggucACGuaUCUUCCCUCGCGUa -3'
miRNA:   3'- gUCGCGu-------UGUcgAGGGGGGAGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 105766 0.66 0.775451
Target:  5'- gCGGUGCGACGGCggCUUCC-CGCGUc -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGaGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 99717 0.66 0.775451
Target:  5'- gAGCuGacgaaGGCGGUUCCCCUCUCGuCGUc -3'
miRNA:   3'- gUCG-Cg----UUGUCGAGGGGGGAGC-GCAc -5'
15974 5' -60.6 NC_004065.1 + 147391 0.67 0.757488
Target:  5'- gGGCGCAGaGGUUCgCCCCCggacgcaacCGCGUc -3'
miRNA:   3'- gUCGCGUUgUCGAG-GGGGGa--------GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 142947 0.67 0.739123
Target:  5'- cCAGgGC--CAGCUgCCCaCCUCGCGc- -3'
miRNA:   3'- -GUCgCGuuGUCGAgGGG-GGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 94295 0.67 0.739123
Target:  5'- aAGCaGCAACAGCUCcaccagauCCCCCgccCGCa-- -3'
miRNA:   3'- gUCG-CGUUGUCGAG--------GGGGGa--GCGcac -5'
15974 5' -60.6 NC_004065.1 + 132198 0.67 0.72981
Target:  5'- gUAGCGgAACAGgUCgaaCUCCUCGCGg- -3'
miRNA:   3'- -GUCGCgUUGUCgAGg--GGGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 70293 0.67 0.72981
Target:  5'- gCGGCGgccuuCAGCAGCaCCCCCCacacggcCGCGUa -3'
miRNA:   3'- -GUCGC-----GUUGUCGaGGGGGGa------GCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.