miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15974 5' -60.6 NC_004065.1 + 132198 0.67 0.72981
Target:  5'- gUAGCGgAACAGgUCgaaCUCCUCGCGg- -3'
miRNA:   3'- -GUCGCgUUGUCgAGg--GGGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 70293 0.67 0.72981
Target:  5'- gCGGCGgccuuCAGCAGCaCCCCCCacacggcCGCGUa -3'
miRNA:   3'- -GUCGC-----GUUGUCGaGGGGGGa------GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 152565 0.68 0.68226
Target:  5'- uCAGC-CAuguaucucuuuuACAGCUCCCCCCUCa---- -3'
miRNA:   3'- -GUCGcGU------------UGUCGAGGGGGGAGcgcac -5'
15974 5' -60.6 NC_004065.1 + 94422 0.69 0.643499
Target:  5'- -cGCGUGACGGCcgUCUCCCagcggCGCGUGu -3'
miRNA:   3'- guCGCGUUGUCG--AGGGGGga---GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 92091 0.69 0.643499
Target:  5'- -uGCGcCAGCAGCUCCgagCCCggCGCGUc -3'
miRNA:   3'- guCGC-GUUGUCGAGGg--GGGa-GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 122929 0.69 0.594911
Target:  5'- uCAGcCGCGACAGCUUCCCCacguccccggUCGUGa- -3'
miRNA:   3'- -GUC-GCGUUGUCGAGGGGGg---------AGCGCac -5'
15974 5' -60.6 NC_004065.1 + 141414 0.69 0.643499
Target:  5'- -cGCGCaAGCAGUUCCCcaagCCCUCgGCGa- -3'
miRNA:   3'- guCGCG-UUGUCGAGGG----GGGAG-CGCac -5'
15974 5' -60.6 NC_004065.1 + 22412 0.69 0.643499
Target:  5'- gAGCGCcACGGCUUugUCUCCagUCGCGUGc -3'
miRNA:   3'- gUCGCGuUGUCGAG--GGGGG--AGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 160880 0.7 0.579456
Target:  5'- cCAGCGuCGACAGCUUCCCCagcaccuugucggCGCGc- -3'
miRNA:   3'- -GUCGC-GUUGUCGAGGGGGga-----------GCGCac -5'
15974 5' -60.6 NC_004065.1 + 207510 0.71 0.518724
Target:  5'- gCGGCGCGAUAGCggucgucggUCCUCCUCGCc-- -3'
miRNA:   3'- -GUCGCGUUGUCGa--------GGGGGGAGCGcac -5'
15974 5' -60.6 NC_004065.1 + 200961 0.72 0.429562
Target:  5'- gAGCGCGGCGGCUCCaggaUCggUGCGUGg -3'
miRNA:   3'- gUCGCGUUGUCGAGGg---GGgaGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 80321 0.72 0.446695
Target:  5'- cCGGCGCGGCcGCggCCCCCCg-GCGUu -3'
miRNA:   3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5'
15974 5' -60.6 NC_004065.1 + 22566 0.73 0.380582
Target:  5'- cCAGCGC-ACGGCUCaCCCCaaCUCGUGg- -3'
miRNA:   3'- -GUCGCGuUGUCGAG-GGGG--GAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 60774 0.73 0.380582
Target:  5'- aCAGgGCcGCGGcCUCCCgCCUCGCGa- -3'
miRNA:   3'- -GUCgCGuUGUC-GAGGGgGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 132419 0.73 0.404605
Target:  5'- uCGGCaGCGGCGGCggCCUCCUUCGaCGUGu -3'
miRNA:   3'- -GUCG-CGUUGUCGa-GGGGGGAGC-GCAC- -5'
15974 5' -60.6 NC_004065.1 + 165581 0.74 0.342717
Target:  5'- aCGGCGCGACAGUUCCUCagCgUCuGCGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGAGGGG--GgAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 83609 0.74 0.365105
Target:  5'- aGGCGC-GCAGCUCUCCCUUCGaGUa -3'
miRNA:   3'- gUCGCGuUGUCGAGGGGGGAGCgCAc -5'
15974 5' -60.6 NC_004065.1 + 66197 0.76 0.263257
Target:  5'- uGGCGCuugGGCUCCCCCCcgcUGCGUGg -3'
miRNA:   3'- gUCGCGuugUCGAGGGGGGa--GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 137952 0.76 0.281613
Target:  5'- uGGCGCAACGcGCggCCCUCCgagcgCGCGUGa -3'
miRNA:   3'- gUCGCGUUGU-CGa-GGGGGGa----GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 163904 0.76 0.282242
Target:  5'- cCAGCGCGcCAGCgccucggugaugucgCCCCCCagCGCGUGc -3'
miRNA:   3'- -GUCGCGUuGUCGa--------------GGGGGGa-GCGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.