Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15974 | 5' | -60.6 | NC_004065.1 | + | 35399 | 1.08 | 0.001902 |
Target: 5'- gCAGCGCAACAGCUCCCCCCUCGCGUGg -3' miRNA: 3'- -GUCGCGUUGUCGAGGGGGGAGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 162683 | 0.79 | 0.177062 |
Target: 5'- ---gGCAGCGGCUUCCCUCUCGCGUa -3' miRNA: 3'- gucgCGUUGUCGAGGGGGGAGCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 163904 | 0.76 | 0.282242 |
Target: 5'- cCAGCGCGcCAGCgccucggugaugucgCCCCCCagCGCGUGc -3' miRNA: 3'- -GUCGCGUuGUCGa--------------GGGGGGa-GCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 137952 | 0.76 | 0.281613 |
Target: 5'- uGGCGCAACGcGCggCCCUCCgagcgCGCGUGa -3' miRNA: 3'- gUCGCGUUGU-CGa-GGGGGGa----GCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 66197 | 0.76 | 0.263257 |
Target: 5'- uGGCGCuugGGCUCCCCCCcgcUGCGUGg -3' miRNA: 3'- gUCGCGuugUCGAGGGGGGa--GCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 163254 | 0.76 | 0.257358 |
Target: 5'- uCGGCGCAGCGGCggcgccggCgCCUCCUCGCGa- -3' miRNA: 3'- -GUCGCGUUGUCGa-------G-GGGGGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 165581 | 0.74 | 0.342717 |
Target: 5'- aCGGCGCGACAGUUCCUCagCgUCuGCGUGg -3' miRNA: 3'- -GUCGCGUUGUCGAGGGG--GgAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 83609 | 0.74 | 0.365105 |
Target: 5'- aGGCGC-GCAGCUCUCCCUUCGaGUa -3' miRNA: 3'- gUCGCGuUGUCGAGGGGGGAGCgCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 22566 | 0.73 | 0.380582 |
Target: 5'- cCAGCGC-ACGGCUCaCCCCaaCUCGUGg- -3' miRNA: 3'- -GUCGCGuUGUCGAG-GGGG--GAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 60774 | 0.73 | 0.380582 |
Target: 5'- aCAGgGCcGCGGcCUCCCgCCUCGCGa- -3' miRNA: 3'- -GUCgCGuUGUC-GAGGGgGGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 132419 | 0.73 | 0.404605 |
Target: 5'- uCGGCaGCGGCGGCggCCUCCUUCGaCGUGu -3' miRNA: 3'- -GUCG-CGUUGUCGa-GGGGGGAGC-GCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 80321 | 0.72 | 0.446695 |
Target: 5'- cCGGCGCGGCcGCggCCCCCCg-GCGUu -3' miRNA: 3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 200961 | 0.72 | 0.429562 |
Target: 5'- gAGCGCGGCGGCUCCaggaUCggUGCGUGg -3' miRNA: 3'- gUCGCGUUGUCGAGGg---GGgaGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 207510 | 0.71 | 0.518724 |
Target: 5'- gCGGCGCGAUAGCggucgucggUCCUCCUCGCc-- -3' miRNA: 3'- -GUCGCGUUGUCGa--------GGGGGGAGCGcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 160880 | 0.7 | 0.579456 |
Target: 5'- cCAGCGuCGACAGCUUCCCCagcaccuugucggCGCGc- -3' miRNA: 3'- -GUCGC-GUUGUCGAGGGGGga-----------GCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 92091 | 0.69 | 0.643499 |
Target: 5'- -uGCGcCAGCAGCUCCgagCCCggCGCGUc -3' miRNA: 3'- guCGC-GUUGUCGAGGg--GGGa-GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 94422 | 0.69 | 0.643499 |
Target: 5'- -cGCGUGACGGCcgUCUCCCagcggCGCGUGu -3' miRNA: 3'- guCGCGUUGUCG--AGGGGGga---GCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 122929 | 0.69 | 0.594911 |
Target: 5'- uCAGcCGCGACAGCUUCCCCacguccccggUCGUGa- -3' miRNA: 3'- -GUC-GCGUUGUCGAGGGGGg---------AGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 22412 | 0.69 | 0.643499 |
Target: 5'- gAGCGCcACGGCUUugUCUCCagUCGCGUGc -3' miRNA: 3'- gUCGCGuUGUCGAG--GGGGG--AGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 141414 | 0.69 | 0.643499 |
Target: 5'- -cGCGCaAGCAGUUCCCcaagCCCUCgGCGa- -3' miRNA: 3'- guCGCG-UUGUCGAGGG----GGGAG-CGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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