Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15974 | 5' | -60.6 | NC_004065.1 | + | 152565 | 0.68 | 0.68226 |
Target: 5'- uCAGC-CAuguaucucuuuuACAGCUCCCCCCUCa---- -3' miRNA: 3'- -GUCGcGU------------UGUCGAGGGGGGAGcgcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 130128 | 0.67 | 0.720422 |
Target: 5'- uCGGCGCAagcugggccugAgGGUgaucaucccuuUCCCCCCUCGCa-- -3' miRNA: 3'- -GUCGCGU-----------UgUCG-----------AGGGGGGAGCGcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 152012 | 0.67 | 0.72981 |
Target: 5'- uCAGCGCGcucagcucgaACGGCUCCUCCgUCcCGg- -3' miRNA: 3'- -GUCGCGU----------UGUCGAGGGGGgAGcGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 142947 | 0.67 | 0.739123 |
Target: 5'- cCAGgGC--CAGCUgCCCaCCUCGCGc- -3' miRNA: 3'- -GUCgCGuuGUCGAgGGG-GGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 147391 | 0.67 | 0.757488 |
Target: 5'- gGGCGCAGaGGUUCgCCCCCggacgcaacCGCGUc -3' miRNA: 3'- gUCGCGUUgUCGAG-GGGGGa--------GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 70293 | 0.67 | 0.72981 |
Target: 5'- gCGGCGgccuuCAGCAGCaCCCCCCacacggcCGCGUa -3' miRNA: 3'- -GUCGC-----GUUGUCGaGGGGGGa------GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 132198 | 0.67 | 0.72981 |
Target: 5'- gUAGCGgAACAGgUCgaaCUCCUCGCGg- -3' miRNA: 3'- -GUCGCgUUGUCgAGg--GGGGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 94295 | 0.67 | 0.739123 |
Target: 5'- aAGCaGCAACAGCUCcaccagauCCCCCgccCGCa-- -3' miRNA: 3'- gUCG-CGUUGUCGAG--------GGGGGa--GCGcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 105766 | 0.66 | 0.775451 |
Target: 5'- gCGGUGCGACGGCggCUUCC-CGCGUc -3' miRNA: 3'- -GUCGCGUUGUCGagGGGGGaGCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 148835 | 0.66 | 0.809928 |
Target: 5'- -uGCGCGuuggggauCAGCUCUCCCgaCUCgGUGUGg -3' miRNA: 3'- guCGCGUu-------GUCGAGGGGG--GAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 147648 | 0.66 | 0.784263 |
Target: 5'- gAGCcCu---GCUCCCCCUUCaGCGUGu -3' miRNA: 3'- gUCGcGuuguCGAGGGGGGAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 150808 | 0.66 | 0.792952 |
Target: 5'- -uGCGCGAUguccaGGCUCaCCCCgUaCGCGUc -3' miRNA: 3'- guCGCGUUG-----UCGAG-GGGGgA-GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 99717 | 0.66 | 0.775451 |
Target: 5'- gAGCuGacgaaGGCGGUUCCCCUCUCGuCGUc -3' miRNA: 3'- gUCG-Cg----UUGUCGAGGGGGGAGC-GCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 113190 | 0.66 | 0.818201 |
Target: 5'- aGGCGCAuggacgacaGCGGCUgCCCCgacagcagcUUCGuCGUGa -3' miRNA: 3'- gUCGCGU---------UGUCGAgGGGG---------GAGC-GCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 150615 | 0.66 | 0.792952 |
Target: 5'- gCAGCGCGGCuauGCUgUCCacgaUCGUGUGu -3' miRNA: 3'- -GUCGCGUUGu--CGAgGGGgg--AGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 169129 | 0.66 | 0.792952 |
Target: 5'- gCGGC-CAGCAGUUCCCgagaCgCUCGCGa- -3' miRNA: 3'- -GUCGcGUUGUCGAGGGg---G-GAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 196359 | 0.66 | 0.801509 |
Target: 5'- --uCGCAGCGGCcCUCCCCgCGCGc- -3' miRNA: 3'- gucGCGUUGUCGaGGGGGGaGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 63498 | 0.66 | 0.809928 |
Target: 5'- -cGCGCAGCcaggugcggauGGC-CUCgCCCUCGCGg- -3' miRNA: 3'- guCGCGUUG-----------UCGaGGG-GGGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 128169 | 0.66 | 0.809928 |
Target: 5'- gCGGCgGCGAUAGCgCCCCCgaCGCc-- -3' miRNA: 3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 18863 | 0.66 | 0.817381 |
Target: 5'- gAGUGCGACAucccggcacgcccGCUCCCCCC-CGaaCGg- -3' miRNA: 3'- gUCGCGUUGU-------------CGAGGGGGGaGC--GCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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