miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15974 5' -60.6 NC_004065.1 + 4644 0.66 0.809928
Target:  5'- uCAGCGC--CAGCgCCCCCgC-CGCGg- -3'
miRNA:   3'- -GUCGCGuuGUCGaGGGGG-GaGCGCac -5'
15974 5' -60.6 NC_004065.1 + 18863 0.66 0.817381
Target:  5'- gAGUGCGACAucccggcacgcccGCUCCCCCC-CGaaCGg- -3'
miRNA:   3'- gUCGCGUUGU-------------CGAGGGGGGaGC--GCac -5'
15974 5' -60.6 NC_004065.1 + 22412 0.69 0.643499
Target:  5'- gAGCGCcACGGCUUugUCUCCagUCGCGUGc -3'
miRNA:   3'- gUCGCGuUGUCGAG--GGGGG--AGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 22566 0.73 0.380582
Target:  5'- cCAGCGC-ACGGCUCaCCCCaaCUCGUGg- -3'
miRNA:   3'- -GUCGCGuUGUCGAG-GGGG--GAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 35399 1.08 0.001902
Target:  5'- gCAGCGCAACAGCUCCCCCCUCGCGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGAGGGGGGAGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 60774 0.73 0.380582
Target:  5'- aCAGgGCcGCGGcCUCCCgCCUCGCGa- -3'
miRNA:   3'- -GUCgCGuUGUC-GAGGGgGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 63498 0.66 0.809928
Target:  5'- -cGCGCAGCcaggugcggauGGC-CUCgCCCUCGCGg- -3'
miRNA:   3'- guCGCGUUG-----------UCGaGGG-GGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 66197 0.76 0.263257
Target:  5'- uGGCGCuugGGCUCCCCCCcgcUGCGUGg -3'
miRNA:   3'- gUCGCGuugUCGAGGGGGGa--GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 70293 0.67 0.72981
Target:  5'- gCGGCGgccuuCAGCAGCaCCCCCCacacggcCGCGUa -3'
miRNA:   3'- -GUCGC-----GUUGUCGaGGGGGGa------GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 79561 0.66 0.809928
Target:  5'- gCGGCGCAGCGGCg-CUUCCUgGCcgagGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGAgCG----CAC- -5'
15974 5' -60.6 NC_004065.1 + 80321 0.72 0.446695
Target:  5'- cCGGCGCGGCcGCggCCCCCCg-GCGUu -3'
miRNA:   3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5'
15974 5' -60.6 NC_004065.1 + 83609 0.74 0.365105
Target:  5'- aGGCGC-GCAGCUCUCCCUUCGaGUa -3'
miRNA:   3'- gUCGCGuUGUCGAGGGGGGAGCgCAc -5'
15974 5' -60.6 NC_004065.1 + 92091 0.69 0.643499
Target:  5'- -uGCGcCAGCAGCUCCgagCCCggCGCGUc -3'
miRNA:   3'- guCGC-GUUGUCGAGGg--GGGa-GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 94295 0.67 0.739123
Target:  5'- aAGCaGCAACAGCUCcaccagauCCCCCgccCGCa-- -3'
miRNA:   3'- gUCG-CGUUGUCGAG--------GGGGGa--GCGcac -5'
15974 5' -60.6 NC_004065.1 + 94422 0.69 0.643499
Target:  5'- -cGCGUGACGGCcgUCUCCCagcggCGCGUGu -3'
miRNA:   3'- guCGCGUUGUCG--AGGGGGga---GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 99717 0.66 0.775451
Target:  5'- gAGCuGacgaaGGCGGUUCCCCUCUCGuCGUc -3'
miRNA:   3'- gUCG-Cg----UUGUCGAGGGGGGAGC-GCAc -5'
15974 5' -60.6 NC_004065.1 + 105766 0.66 0.775451
Target:  5'- gCGGUGCGACGGCggCUUCC-CGCGUc -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGaGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 113190 0.66 0.818201
Target:  5'- aGGCGCAuggacgacaGCGGCUgCCCCgacagcagcUUCGuCGUGa -3'
miRNA:   3'- gUCGCGU---------UGUCGAgGGGG---------GAGC-GCAC- -5'
15974 5' -60.6 NC_004065.1 + 122929 0.69 0.594911
Target:  5'- uCAGcCGCGACAGCUUCCCCacguccccggUCGUGa- -3'
miRNA:   3'- -GUC-GCGUUGUCGAGGGGGg---------AGCGCac -5'
15974 5' -60.6 NC_004065.1 + 128169 0.66 0.809928
Target:  5'- gCGGCgGCGAUAGCgCCCCCgaCGCc-- -3'
miRNA:   3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.