Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15974 | 5' | -60.6 | NC_004065.1 | + | 207510 | 0.71 | 0.518724 |
Target: 5'- gCGGCGCGAUAGCggucgucggUCCUCCUCGCc-- -3' miRNA: 3'- -GUCGCGUUGUCGa--------GGGGGGAGCGcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 200961 | 0.72 | 0.429562 |
Target: 5'- gAGCGCGGCGGCUCCaggaUCggUGCGUGg -3' miRNA: 3'- gUCGCGUUGUCGAGGg---GGgaGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 196359 | 0.66 | 0.801509 |
Target: 5'- --uCGCAGCGGCcCUCCCCgCGCGc- -3' miRNA: 3'- gucGCGUUGUCGaGGGGGGaGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 188937 | 0.66 | 0.784263 |
Target: 5'- uGGCGCucauggucACGuaUCUUCCCUCGCGUa -3' miRNA: 3'- gUCGCGu-------UGUcgAGGGGGGAGCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 169129 | 0.66 | 0.792952 |
Target: 5'- gCGGC-CAGCAGUUCCCgagaCgCUCGCGa- -3' miRNA: 3'- -GUCGcGUUGUCGAGGGg---G-GAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 165581 | 0.74 | 0.342717 |
Target: 5'- aCGGCGCGACAGUUCCUCagCgUCuGCGUGg -3' miRNA: 3'- -GUCGCGUUGUCGAGGGG--GgAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 163904 | 0.76 | 0.282242 |
Target: 5'- cCAGCGCGcCAGCgccucggugaugucgCCCCCCagCGCGUGc -3' miRNA: 3'- -GUCGCGUuGUCGa--------------GGGGGGa-GCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 163254 | 0.76 | 0.257358 |
Target: 5'- uCGGCGCAGCGGCggcgccggCgCCUCCUCGCGa- -3' miRNA: 3'- -GUCGCGUUGUCGa-------G-GGGGGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 162683 | 0.79 | 0.177062 |
Target: 5'- ---gGCAGCGGCUUCCCUCUCGCGUa -3' miRNA: 3'- gucgCGUUGUCGAGGGGGGAGCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 160880 | 0.7 | 0.579456 |
Target: 5'- cCAGCGuCGACAGCUUCCCCagcaccuugucggCGCGc- -3' miRNA: 3'- -GUCGC-GUUGUCGAGGGGGga-----------GCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 152565 | 0.68 | 0.68226 |
Target: 5'- uCAGC-CAuguaucucuuuuACAGCUCCCCCCUCa---- -3' miRNA: 3'- -GUCGcGU------------UGUCGAGGGGGGAGcgcac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 152012 | 0.67 | 0.72981 |
Target: 5'- uCAGCGCGcucagcucgaACGGCUCCUCCgUCcCGg- -3' miRNA: 3'- -GUCGCGU----------UGUCGAGGGGGgAGcGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 150808 | 0.66 | 0.792952 |
Target: 5'- -uGCGCGAUguccaGGCUCaCCCCgUaCGCGUc -3' miRNA: 3'- guCGCGUUG-----UCGAG-GGGGgA-GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 150615 | 0.66 | 0.792952 |
Target: 5'- gCAGCGCGGCuauGCUgUCCacgaUCGUGUGu -3' miRNA: 3'- -GUCGCGUUGu--CGAgGGGgg--AGCGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 148835 | 0.66 | 0.809928 |
Target: 5'- -uGCGCGuuggggauCAGCUCUCCCgaCUCgGUGUGg -3' miRNA: 3'- guCGCGUu-------GUCGAGGGGG--GAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 147648 | 0.66 | 0.784263 |
Target: 5'- gAGCcCu---GCUCCCCCUUCaGCGUGu -3' miRNA: 3'- gUCGcGuuguCGAGGGGGGAG-CGCAC- -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 147391 | 0.67 | 0.757488 |
Target: 5'- gGGCGCAGaGGUUCgCCCCCggacgcaacCGCGUc -3' miRNA: 3'- gUCGCGUUgUCGAG-GGGGGa--------GCGCAc -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 142947 | 0.67 | 0.739123 |
Target: 5'- cCAGgGC--CAGCUgCCCaCCUCGCGc- -3' miRNA: 3'- -GUCgCGuuGUCGAgGGG-GGAGCGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 141414 | 0.69 | 0.643499 |
Target: 5'- -cGCGCaAGCAGUUCCCcaagCCCUCgGCGa- -3' miRNA: 3'- guCGCG-UUGUCGAGGG----GGGAG-CGCac -5' |
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15974 | 5' | -60.6 | NC_004065.1 | + | 137952 | 0.76 | 0.281613 |
Target: 5'- uGGCGCAACGcGCggCCCUCCgagcgCGCGUGa -3' miRNA: 3'- gUCGCGUUGU-CGa-GGGGGGa----GCGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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