miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15974 5' -60.6 NC_004065.1 + 148835 0.66 0.809928
Target:  5'- -uGCGCGuuggggauCAGCUCUCCCgaCUCgGUGUGg -3'
miRNA:   3'- guCGCGUu-------GUCGAGGGGG--GAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 132198 0.67 0.72981
Target:  5'- gUAGCGgAACAGgUCgaaCUCCUCGCGg- -3'
miRNA:   3'- -GUCGCgUUGUCgAGg--GGGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 142947 0.67 0.739123
Target:  5'- cCAGgGC--CAGCUgCCCaCCUCGCGc- -3'
miRNA:   3'- -GUCgCGuuGUCGAgGGG-GGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 147391 0.67 0.757488
Target:  5'- gGGCGCAGaGGUUCgCCCCCggacgcaacCGCGUc -3'
miRNA:   3'- gUCGCGUUgUCGAG-GGGGGa--------GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 188937 0.66 0.784263
Target:  5'- uGGCGCucauggucACGuaUCUUCCCUCGCGUa -3'
miRNA:   3'- gUCGCGu-------UGUcgAGGGGGGAGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 150615 0.66 0.792952
Target:  5'- gCAGCGCGGCuauGCUgUCCacgaUCGUGUGu -3'
miRNA:   3'- -GUCGCGUUGu--CGAgGGGgg--AGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 169129 0.66 0.792952
Target:  5'- gCGGC-CAGCAGUUCCCgagaCgCUCGCGa- -3'
miRNA:   3'- -GUCGcGUUGUCGAGGGg---G-GAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 196359 0.66 0.801509
Target:  5'- --uCGCAGCGGCcCUCCCCgCGCGc- -3'
miRNA:   3'- gucGCGUUGUCGaGGGGGGaGCGCac -5'
15974 5' -60.6 NC_004065.1 + 63498 0.66 0.809928
Target:  5'- -cGCGCAGCcaggugcggauGGC-CUCgCCCUCGCGg- -3'
miRNA:   3'- guCGCGUUG-----------UCGaGGG-GGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 70293 0.67 0.72981
Target:  5'- gCGGCGgccuuCAGCAGCaCCCCCCacacggcCGCGUa -3'
miRNA:   3'- -GUCGC-----GUUGUCGaGGGGGGa------GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 152565 0.68 0.68226
Target:  5'- uCAGC-CAuguaucucuuuuACAGCUCCCCCCUCa---- -3'
miRNA:   3'- -GUCGcGU------------UGUCGAGGGGGGAGcgcac -5'
15974 5' -60.6 NC_004065.1 + 22412 0.69 0.643499
Target:  5'- gAGCGCcACGGCUUugUCUCCagUCGCGUGc -3'
miRNA:   3'- gUCGCGuUGUCGAG--GGGGG--AGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 83609 0.74 0.365105
Target:  5'- aGGCGC-GCAGCUCUCCCUUCGaGUa -3'
miRNA:   3'- gUCGCGuUGUCGAGGGGGGAGCgCAc -5'
15974 5' -60.6 NC_004065.1 + 22566 0.73 0.380582
Target:  5'- cCAGCGC-ACGGCUCaCCCCaaCUCGUGg- -3'
miRNA:   3'- -GUCGCGuUGUCGAG-GGGG--GAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 60774 0.73 0.380582
Target:  5'- aCAGgGCcGCGGcCUCCCgCCUCGCGa- -3'
miRNA:   3'- -GUCgCGuUGUC-GAGGGgGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 200961 0.72 0.429562
Target:  5'- gAGCGCGGCGGCUCCaggaUCggUGCGUGg -3'
miRNA:   3'- gUCGCGUUGUCGAGGg---GGgaGCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 207510 0.71 0.518724
Target:  5'- gCGGCGCGAUAGCggucgucggUCCUCCUCGCc-- -3'
miRNA:   3'- -GUCGCGUUGUCGa--------GGGGGGAGCGcac -5'
15974 5' -60.6 NC_004065.1 + 122929 0.69 0.594911
Target:  5'- uCAGcCGCGACAGCUUCCCCacguccccggUCGUGa- -3'
miRNA:   3'- -GUC-GCGUUGUCGAGGGGGg---------AGCGCac -5'
15974 5' -60.6 NC_004065.1 + 92091 0.69 0.643499
Target:  5'- -uGCGcCAGCAGCUCCgagCCCggCGCGUc -3'
miRNA:   3'- guCGC-GUUGUCGAGGg--GGGa-GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 141414 0.69 0.643499
Target:  5'- -cGCGCaAGCAGUUCCCcaagCCCUCgGCGa- -3'
miRNA:   3'- guCGCG-UUGUCGAGGG----GGGAG-CGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.