miRNA: 3'- -GUCG-CGUUGUCGa-GGGGGGAGC-GCAC- -5'
miRNA: 3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5'
miRNA: 3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5'
Results 41 - 43 of 43 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15974 | 5' | -60.6 | NC_004065.1 | + | 132419 | 0.73 | 0.404605 |
|
Target: 5'- uCGGCaGCGGCGGCggCCUCCUUCGaCGUGu -3' miRNA: 3'- -GUCG-CGUUGUCGa-GGGGGGAGC-GCAC- -5' |
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| 15974 | 5' | -60.6 | NC_004065.1 | + | 80321 | 0.72 | 0.446695 |
|
Target: 5'- cCGGCGCGGCcGCggCCCCCCg-GCGUu -3' miRNA: 3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5' |
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| 15974 | 5' | -60.6 | NC_004065.1 | + | 128169 | 0.66 | 0.809928 |
|
Target: 5'- gCGGCgGCGAUAGCgCCCCCgaCGCc-- -3' miRNA: 3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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