miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15974 5' -60.6 NC_004065.1 + 162683 0.79 0.177062
Target:  5'- ---gGCAGCGGCUUCCCUCUCGCGUa -3'
miRNA:   3'- gucgCGUUGUCGAGGGGGGAGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 150808 0.66 0.792952
Target:  5'- -uGCGCGAUguccaGGCUCaCCCCgUaCGCGUc -3'
miRNA:   3'- guCGCGUUG-----UCGAG-GGGGgA-GCGCAc -5'
15974 5' -60.6 NC_004065.1 + 4644 0.66 0.809928
Target:  5'- uCAGCGC--CAGCgCCCCCgC-CGCGg- -3'
miRNA:   3'- -GUCGCGuuGUCGaGGGGG-GaGCGCac -5'
15974 5' -60.6 NC_004065.1 + 128169 0.66 0.809928
Target:  5'- gCGGCgGCGAUAGCgCCCCCgaCGCc-- -3'
miRNA:   3'- -GUCG-CGUUGUCGaGGGGGgaGCGcac -5'
15974 5' -60.6 NC_004065.1 + 163904 0.76 0.282242
Target:  5'- cCAGCGCGcCAGCgccucggugaugucgCCCCCCagCGCGUGc -3'
miRNA:   3'- -GUCGCGUuGUCGa--------------GGGGGGa-GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 165581 0.74 0.342717
Target:  5'- aCGGCGCGACAGUUCCUCagCgUCuGCGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGAGGGG--GgAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 80321 0.72 0.446695
Target:  5'- cCGGCGCGGCcGCggCCCCCCg-GCGUu -3'
miRNA:   3'- -GUCGCGUUGuCGa-GGGGGGagCGCAc -5'
15974 5' -60.6 NC_004065.1 + 160880 0.7 0.579456
Target:  5'- cCAGCGuCGACAGCUUCCCCagcaccuugucggCGCGc- -3'
miRNA:   3'- -GUCGC-GUUGUCGAGGGGGga-----------GCGCac -5'
15974 5' -60.6 NC_004065.1 + 152012 0.67 0.72981
Target:  5'- uCAGCGCGcucagcucgaACGGCUCCUCCgUCcCGg- -3'
miRNA:   3'- -GUCGCGU----------UGUCGAGGGGGgAGcGCac -5'
15974 5' -60.6 NC_004065.1 + 99717 0.66 0.775451
Target:  5'- gAGCuGacgaaGGCGGUUCCCCUCUCGuCGUc -3'
miRNA:   3'- gUCG-Cg----UUGUCGAGGGGGGAGC-GCAc -5'
15974 5' -60.6 NC_004065.1 + 130128 0.67 0.720422
Target:  5'- uCGGCGCAagcugggccugAgGGUgaucaucccuuUCCCCCCUCGCa-- -3'
miRNA:   3'- -GUCGCGU-----------UgUCG-----------AGGGGGGAGCGcac -5'
15974 5' -60.6 NC_004065.1 + 163254 0.76 0.257358
Target:  5'- uCGGCGCAGCGGCggcgccggCgCCUCCUCGCGa- -3'
miRNA:   3'- -GUCGCGUUGUCGa-------G-GGGGGAGCGCac -5'
15974 5' -60.6 NC_004065.1 + 105766 0.66 0.775451
Target:  5'- gCGGUGCGACGGCggCUUCC-CGCGUc -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGaGCGCAc -5'
15974 5' -60.6 NC_004065.1 + 66197 0.76 0.263257
Target:  5'- uGGCGCuugGGCUCCCCCCcgcUGCGUGg -3'
miRNA:   3'- gUCGCGuugUCGAGGGGGGa--GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 94422 0.69 0.643499
Target:  5'- -cGCGUGACGGCcgUCUCCCagcggCGCGUGu -3'
miRNA:   3'- guCGCGUUGUCG--AGGGGGga---GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 147648 0.66 0.784263
Target:  5'- gAGCcCu---GCUCCCCCUUCaGCGUGu -3'
miRNA:   3'- gUCGcGuuguCGAGGGGGGAG-CGCAC- -5'
15974 5' -60.6 NC_004065.1 + 79561 0.66 0.809928
Target:  5'- gCGGCGCAGCGGCg-CUUCCUgGCcgagGUGg -3'
miRNA:   3'- -GUCGCGUUGUCGagGGGGGAgCG----CAC- -5'
15974 5' -60.6 NC_004065.1 + 137952 0.76 0.281613
Target:  5'- uGGCGCAACGcGCggCCCUCCgagcgCGCGUGa -3'
miRNA:   3'- gUCGCGUUGU-CGa-GGGGGGa----GCGCAC- -5'
15974 5' -60.6 NC_004065.1 + 132419 0.73 0.404605
Target:  5'- uCGGCaGCGGCGGCggCCUCCUUCGaCGUGu -3'
miRNA:   3'- -GUCG-CGUUGUCGa-GGGGGGAGC-GCAC- -5'
15974 5' -60.6 NC_004065.1 + 94295 0.67 0.739123
Target:  5'- aAGCaGCAACAGCUCcaccagauCCCCCgccCGCa-- -3'
miRNA:   3'- gUCG-CGUUGUCGAG--------GGGGGa--GCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.