miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 205009 0.66 0.98568
Target:  5'- gGGACACGGCcccuuGCCGCgCCCAcGGAc-- -3'
miRNA:   3'- -CCUGUGCUGc----UGGUG-GGGUcUCUucu -5'
15977 3' -54.6 NC_004065.1 + 222455 0.66 0.98568
Target:  5'- cGGACcCGACGACgCACgauaCgCAGAcGggGAg -3'
miRNA:   3'- -CCUGuGCUGCUG-GUGg---G-GUCU-CuuCU- -5'
15977 3' -54.6 NC_004065.1 + 52228 0.66 0.98568
Target:  5'- cGGcUACGAa-ACCaagcGCCCCAGAGgcGAa -3'
miRNA:   3'- -CCuGUGCUgcUGG----UGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 135392 0.66 0.98568
Target:  5'- uGACGCGcCGGCCGCgCCCgaccccgucaGGAGccGAu -3'
miRNA:   3'- cCUGUGCuGCUGGUG-GGG----------UCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 18552 0.66 0.98568
Target:  5'- cGACGcCGACGACCuCUCCGGcgacuccuccGAGGAg -3'
miRNA:   3'- cCUGU-GCUGCUGGuGGGGUCu---------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 90697 0.66 0.98568
Target:  5'- uGGGCACGAacaCGAuCCGCgUCUGGuAGAGGAu -3'
miRNA:   3'- -CCUGUGCU---GCU-GGUG-GGGUC-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 199884 0.66 0.98568
Target:  5'- -aGCACGAgCGGCCGgucgcccuCCCCGGGGGu-- -3'
miRNA:   3'- ccUGUGCU-GCUGGU--------GGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 194463 0.66 0.98568
Target:  5'- uGGGCACGGCGGCgccgccgcucaCGCCuCCucucuuGAAGAa -3'
miRNA:   3'- -CCUGUGCUGCUG-----------GUGG-GGucu---CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 65197 0.66 0.98568
Target:  5'- aGACGCgGGCGuucuACCGCCUCGGGuugaccccGAAGAg -3'
miRNA:   3'- cCUGUG-CUGC----UGGUGGGGUCU--------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 126380 0.66 0.985515
Target:  5'- -cGCACGGCGACCGCCUgcucgcgCAGAa---- -3'
miRNA:   3'- ccUGUGCUGCUGGUGGG-------GUCUcuucu -5'
15977 3' -54.6 NC_004065.1 + 210321 0.66 0.983966
Target:  5'- uGAC-CGuaGCGuACCAUCCCgucGGGGAAGAa -3'
miRNA:   3'- cCUGuGC--UGC-UGGUGGGG---UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 93769 0.66 0.983966
Target:  5'- uGGAgGCGGCGAgaCAUCUCccgucgucgguGGAGGAGAc -3'
miRNA:   3'- -CCUgUGCUGCUg-GUGGGG-----------UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 37543 0.66 0.983966
Target:  5'- aGGGCAaGAucucggugucCGugUACCUgAGAGAAGAc -3'
miRNA:   3'- -CCUGUgCU----------GCugGUGGGgUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 144515 0.66 0.983966
Target:  5'- cGGGCGCGGCGACCggaaagaaggaaGCCacgccgacUCAGGccucGAAGAu -3'
miRNA:   3'- -CCUGUGCUGCUGG------------UGG--------GGUCU----CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 50772 0.66 0.983966
Target:  5'- aGACACGGCGaAUCGCaCCgAGuuGAAGGc -3'
miRNA:   3'- cCUGUGCUGC-UGGUG-GGgUCu-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 108385 0.66 0.983966
Target:  5'- aGGACgACGACGcgcucaacGCCAUCCuCGGGGGc-- -3'
miRNA:   3'- -CCUG-UGCUGC--------UGGUGGG-GUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 35196 0.66 0.983966
Target:  5'- cGACcgACGACGGUCAUCUCGGAGGAc- -3'
miRNA:   3'- cCUG--UGCUGCUGGUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 102540 0.66 0.983966
Target:  5'- uGGACaacgcucccgccGCGccCGACCACCUCcccGGGGAGAu -3'
miRNA:   3'- -CCUG------------UGCu-GCUGGUGGGGu--CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 127572 0.66 0.983966
Target:  5'- gGGACGuCGACGACUACCUCGc------ -3'
miRNA:   3'- -CCUGU-GCUGCUGGUGGGGUcucuucu -5'
15977 3' -54.6 NC_004065.1 + 227534 0.66 0.983966
Target:  5'- uGGCAUGuuaGACCGCgaCCCGGAGGucuuAGAa -3'
miRNA:   3'- cCUGUGCug-CUGGUG--GGGUCUCU----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.