miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 170589 0.66 0.980076
Target:  5'- cGGAuCACGACGACUuuguCgUCGGAGAc-- -3'
miRNA:   3'- -CCU-GUGCUGCUGGu---GgGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 60564 0.66 0.9821
Target:  5'- cGAuCACGGCGAagagaaagaCCgcggaaggcGCCCCGGAcGAAGAg -3'
miRNA:   3'- cCU-GUGCUGCU---------GG---------UGGGGUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 94792 0.66 0.9821
Target:  5'- cGGACAUcuuGCGAUUAUCCCgAGAucGAAGAa -3'
miRNA:   3'- -CCUGUGc--UGCUGGUGGGG-UCU--CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 78719 0.66 0.977886
Target:  5'- -aGCGCGGaacUGAgCGCCUgGGAGGAGAu -3'
miRNA:   3'- ccUGUGCU---GCUgGUGGGgUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 144515 0.66 0.983966
Target:  5'- cGGGCGCGGCGACCggaaagaaggaaGCCacgccgacUCAGGccucGAAGAu -3'
miRNA:   3'- -CCUGUGCUGCUGG------------UGG--------GGUCU----CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 29514 0.66 0.977886
Target:  5'- -uGCGCGGCGAuccgaucggaUCACUUCAGAGAccAGAg -3'
miRNA:   3'- ccUGUGCUGCU----------GGUGGGGUCUCU--UCU- -5'
15977 3' -54.6 NC_004065.1 + 199884 0.66 0.98568
Target:  5'- -aGCACGAgCGGCCGgucgcccuCCCCGGGGGu-- -3'
miRNA:   3'- ccUGUGCU-GCUGGU--------GGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 93769 0.66 0.983966
Target:  5'- uGGAgGCGGCGAgaCAUCUCccgucgucgguGGAGGAGAc -3'
miRNA:   3'- -CCUgUGCUGCUg-GUGGGG-----------UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 142840 0.66 0.977886
Target:  5'- cGGucGCGCGACGACCGCgCggugCAGGGGcuccuGGAc -3'
miRNA:   3'- -CC--UGUGCUGCUGGUGgG----GUCUCU-----UCU- -5'
15977 3' -54.6 NC_004065.1 + 37543 0.66 0.983966
Target:  5'- aGGGCAaGAucucggugucCGugUACCUgAGAGAAGAc -3'
miRNA:   3'- -CCUGUgCU----------GCugGUGGGgUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 32289 0.66 0.977886
Target:  5'- uGGAguCGGCGAUCGCCaaGGuGAAGc -3'
miRNA:   3'- -CCUguGCUGCUGGUGGggUCuCUUCu -5'
15977 3' -54.6 NC_004065.1 + 127457 0.66 0.977886
Target:  5'- aGGACGCuGAUGGCCgcgggacccgACCCCGGcgccaccgacGAGGAc -3'
miRNA:   3'- -CCUGUG-CUGCUGG----------UGGGGUCu---------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 135392 0.66 0.98568
Target:  5'- uGACGCGcCGGCCGCgCCCgaccccgucaGGAGccGAu -3'
miRNA:   3'- cCUGUGCuGCUGGUG-GGG----------UCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 212221 0.67 0.960901
Target:  5'- cGGACAUcuauacucuACGACCAgcuCCCCGGGGGucuGGAc -3'
miRNA:   3'- -CCUGUGc--------UGCUGGU---GGGGUCUCU---UCU- -5'
15977 3' -54.6 NC_004065.1 + 77370 0.67 0.960901
Target:  5'- -aGCGCGACGAgCACCCggugaUGGuGGAGAa -3'
miRNA:   3'- ccUGUGCUGCUgGUGGG-----GUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 38167 0.67 0.964219
Target:  5'- aGACGCGGCGAuCCGCgCCAGcGGc-- -3'
miRNA:   3'- cCUGUGCUGCU-GGUGgGGUCuCUucu -5'
15977 3' -54.6 NC_004065.1 + 68369 0.67 0.964219
Target:  5'- -aACACGACGACgACCgaGGcGAAGAu -3'
miRNA:   3'- ccUGUGCUGCUGgUGGggUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 34772 0.67 0.972982
Target:  5'- uGACGCGAUaGCC-CgCCCGGcGAAGAu -3'
miRNA:   3'- cCUGUGCUGcUGGuG-GGGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 229578 0.67 0.972982
Target:  5'- cGGACguuacgccGCGAgGGCgGCUCCAGGGGGu- -3'
miRNA:   3'- -CCUG--------UGCUgCUGgUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 150702 0.67 0.972982
Target:  5'- -cGCGCGcACGaACCGCCgCCGGuGGGAGGc -3'
miRNA:   3'- ccUGUGC-UGC-UGGUGG-GGUC-UCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.