miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 12645 0.73 0.772793
Target:  5'- cGACACGGCGaACCGCaccagCCGGAGAuauGAa -3'
miRNA:   3'- cCUGUGCUGC-UGGUGg----GGUCUCUu--CU- -5'
15977 3' -54.6 NC_004065.1 + 207985 0.73 0.772793
Target:  5'- gGGAUACcGCGGCCugCCCGGGGccGu -3'
miRNA:   3'- -CCUGUGcUGCUGGugGGGUCUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 16549 0.73 0.776419
Target:  5'- cGGuCGCGGCGACCGCUCCGacuacaccucagcccGAGAcuacGGAg -3'
miRNA:   3'- -CCuGUGCUGCUGGUGGGGU---------------CUCU----UCU- -5'
15977 3' -54.6 NC_004065.1 + 40238 0.72 0.790722
Target:  5'- uGGACgACGACGACauccCCCCGGGGuuucuGGGg -3'
miRNA:   3'- -CCUG-UGCUGCUGgu--GGGGUCUCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 89353 0.72 0.790722
Target:  5'- aGGCACGACaGGCCGCaggCCGG-GAAGAg -3'
miRNA:   3'- cCUGUGCUG-CUGGUGg--GGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 152326 0.72 0.799489
Target:  5'- gGGACgAUGACGGCUucgACCUCgaGGAGGAGAu -3'
miRNA:   3'- -CCUG-UGCUGCUGG---UGGGG--UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 46366 0.72 0.799489
Target:  5'- gGGACACGAUgugGGCCACCUCAGccGGucccuGGAc -3'
miRNA:   3'- -CCUGUGCUG---CUGGUGGGGUC--UCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 20765 0.72 0.808113
Target:  5'- gGGugAUGGCGAUCGCCCUAGcguacagcuccGAAGAc -3'
miRNA:   3'- -CCugUGCUGCUGGUGGGGUCu----------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 102023 0.72 0.816587
Target:  5'- uGGCGCGGCgGGCCACCUCGGuGAc-- -3'
miRNA:   3'- cCUGUGCUG-CUGGUGGGGUCuCUucu -5'
15977 3' -54.6 NC_004065.1 + 120060 0.72 0.824903
Target:  5'- aGGACGuCGucggaGACCGCgCCGGAGAGGc -3'
miRNA:   3'- -CCUGU-GCug---CUGGUGgGGUCUCUUCu -5'
15977 3' -54.6 NC_004065.1 + 198003 0.71 0.833054
Target:  5'- gGGACACugcGCGAUgGCCUCGGAGgcGGu -3'
miRNA:   3'- -CCUGUGc--UGCUGgUGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 5978 0.71 0.841034
Target:  5'- cGACcugcCGGCGACgACCCgCAGAuGAAGAa -3'
miRNA:   3'- cCUGu---GCUGCUGgUGGG-GUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 34463 0.71 0.841034
Target:  5'- uGGGCACGcaggucuCGGCUAUCCCGGAcGGAGc -3'
miRNA:   3'- -CCUGUGCu------GCUGGUGGGGUCU-CUUCu -5'
15977 3' -54.6 NC_004065.1 + 229542 0.71 0.841034
Target:  5'- cGGACGCGGCG-CgCGgCCCGGAGGc-- -3'
miRNA:   3'- -CCUGUGCUGCuG-GUgGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 97657 0.71 0.841034
Target:  5'- cGACGCGACGGCCugCCCGu------ -3'
miRNA:   3'- cCUGUGCUGCUGGugGGGUcucuucu -5'
15977 3' -54.6 NC_004065.1 + 162286 0.71 0.848834
Target:  5'- cGGACGCGGCG-CCGCUCggCAaAGGAGAa -3'
miRNA:   3'- -CCUGUGCUGCuGGUGGG--GUcUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 11182 0.71 0.863874
Target:  5'- cGACACGACGACCgACUacuaCAcgaucgucGAGAGGAg -3'
miRNA:   3'- cCUGUGCUGCUGG-UGGg---GU--------CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 102494 0.71 0.863874
Target:  5'- aGGGCACGGCGACgggGCCCaugagcaggcggCAGAGGAcGAc -3'
miRNA:   3'- -CCUGUGCUGCUGg--UGGG------------GUCUCUU-CU- -5'
15977 3' -54.6 NC_004065.1 + 84853 0.71 0.863874
Target:  5'- cGGugAuaucuCGACGACUuCCCCGGAGcuGAg -3'
miRNA:   3'- -CCugU-----GCUGCUGGuGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 63567 0.71 0.863874
Target:  5'- cGGAgACGuucuCGGCCACCaucGAGAGGAa -3'
miRNA:   3'- -CCUgUGCu---GCUGGUGGgguCUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.