miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 50977 0.66 0.983786
Target:  5'- uGGGCAuCGGCGGuCCcucgauaGCCCUccgagcgaugGGAGGAGAc -3'
miRNA:   3'- -CCUGU-GCUGCU-GG-------UGGGG----------UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 114606 0.66 0.983786
Target:  5'- aGGGCugGuaucgcccucgcuACGACC-CCgCCGGGGAcGAu -3'
miRNA:   3'- -CCUGugC-------------UGCUGGuGG-GGUCUCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 86805 0.66 0.9821
Target:  5'- cGGGCGCGGCGaacGCgGCCUUAG-GAacAGAu -3'
miRNA:   3'- -CCUGUGCUGC---UGgUGGGGUCuCU--UCU- -5'
15977 3' -54.6 NC_004065.1 + 72131 0.66 0.9821
Target:  5'- uGGACGCGGCGAUgaaCACgCaGGAGAAc- -3'
miRNA:   3'- -CCUGUGCUGCUG---GUGgGgUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 60564 0.66 0.9821
Target:  5'- cGAuCACGGCGAagagaaagaCCgcggaaggcGCCCCGGAcGAAGAg -3'
miRNA:   3'- cCU-GUGCUGCU---------GG---------UGGGGUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 94792 0.66 0.9821
Target:  5'- cGGACAUcuuGCGAUUAUCCCgAGAucGAAGAa -3'
miRNA:   3'- -CCUGUGc--UGCUGGUGGGG-UCU--CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 74092 0.66 0.981905
Target:  5'- -aGCACGACGguGCCGaaacaggUCCUAGAGGAGc -3'
miRNA:   3'- ccUGUGCUGC--UGGU-------GGGGUCUCUUCu -5'
15977 3' -54.6 NC_004065.1 + 170589 0.66 0.980076
Target:  5'- cGGAuCACGACGACUuuguCgUCGGAGAc-- -3'
miRNA:   3'- -CCU-GUGCUGCUGGu---GgGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 127457 0.66 0.977886
Target:  5'- aGGACGCuGAUGGCCgcgggacccgACCCCGGcgccaccgacGAGGAc -3'
miRNA:   3'- -CCUGUG-CUGCUGG----------UGGGGUCu---------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 29514 0.66 0.977886
Target:  5'- -uGCGCGGCGAuccgaucggaUCACUUCAGAGAccAGAg -3'
miRNA:   3'- ccUGUGCUGCU----------GGUGGGGUCUCU--UCU- -5'
15977 3' -54.6 NC_004065.1 + 142840 0.66 0.977886
Target:  5'- cGGucGCGCGACGACCGCgCggugCAGGGGcuccuGGAc -3'
miRNA:   3'- -CC--UGUGCUGCUGGUGgG----GUCUCU-----UCU- -5'
15977 3' -54.6 NC_004065.1 + 32289 0.66 0.977886
Target:  5'- uGGAguCGGCGAUCGCCaaGGuGAAGc -3'
miRNA:   3'- -CCUguGCUGCUGGUGGggUCuCUUCu -5'
15977 3' -54.6 NC_004065.1 + 78719 0.66 0.977886
Target:  5'- -aGCGCGGaacUGAgCGCCUgGGAGGAGAu -3'
miRNA:   3'- ccUGUGCU---GCUgGUGGGgUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 138307 0.67 0.97649
Target:  5'- uGGACGCGGCccugaucgcgugcgaGGCCuccucaCCCAGGGAcAGGu -3'
miRNA:   3'- -CCUGUGCUG---------------CUGGug----GGGUCUCU-UCU- -5'
15977 3' -54.6 NC_004065.1 + 107531 0.67 0.975524
Target:  5'- -cGCGCGGCGACCGCCCagcugcGGGucGu -3'
miRNA:   3'- ccUGUGCUGCUGGUGGGgu----CUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 57818 0.67 0.975524
Target:  5'- cGGGgACGACGAgaucagcguCC-CUCCGGAGAcGAc -3'
miRNA:   3'- -CCUgUGCUGCU---------GGuGGGGUCUCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 196690 0.67 0.975524
Target:  5'- cGGAacccCGACGGgauCCGCCUCuucGAGGAGAa -3'
miRNA:   3'- -CCUgu--GCUGCU---GGUGGGGu--CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 133889 0.67 0.975524
Target:  5'- cGGGCggaACGACgGGCCACCCUcgcGGAGc-GAc -3'
miRNA:   3'- -CCUG---UGCUG-CUGGUGGGG---UCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 65638 0.67 0.97478
Target:  5'- aGGACcUGACGgacccgcugccgcuGCCGCCgCAG-GAAGAu -3'
miRNA:   3'- -CCUGuGCUGC--------------UGGUGGgGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 111131 0.67 0.974529
Target:  5'- aGGACAUGGaggucucgguggaGACCGCCaUCGGAGAGc- -3'
miRNA:   3'- -CCUGUGCUg------------CUGGUGG-GGUCUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.