miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 127052 0.67 0.972982
Target:  5'- cGGGCGCcGCGACUACUaCCGcgcGGAAGAg -3'
miRNA:   3'- -CCUGUGcUGCUGGUGG-GGUc--UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 34772 0.67 0.972982
Target:  5'- uGACGCGAUaGCC-CgCCCGGcGAAGAu -3'
miRNA:   3'- cCUGUGCUGcUGGuG-GGGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 229578 0.67 0.972982
Target:  5'- cGGACguuacgccGCGAgGGCgGCUCCAGGGGGu- -3'
miRNA:   3'- -CCUG--------UGCUgCUGgUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 150702 0.67 0.972982
Target:  5'- -cGCGCGcACGaACCGCCgCCGGuGGGAGGc -3'
miRNA:   3'- ccUGUGC-UGC-UGGUGG-GGUC-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 211533 0.67 0.970254
Target:  5'- cGGugGCGACGA-CGCCCCGucGuuGGu -3'
miRNA:   3'- -CCugUGCUGCUgGUGGGGUcuCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 82789 0.67 0.970254
Target:  5'- cGGugGCGcCGAcCCAUCCgGGGGuGGGg -3'
miRNA:   3'- -CCugUGCuGCU-GGUGGGgUCUCuUCU- -5'
15977 3' -54.6 NC_004065.1 + 57761 0.67 0.970254
Target:  5'- cGGCACGAgcgccaggUGGCCGCCUUAcGAGggGc -3'
miRNA:   3'- cCUGUGCU--------GCUGGUGGGGU-CUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 209191 0.67 0.967335
Target:  5'- cGGAC-CGGCgcuuuccucGACgACCCUcGAGAAGGa -3'
miRNA:   3'- -CCUGuGCUG---------CUGgUGGGGuCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 114123 0.67 0.967033
Target:  5'- aGGC-CGACGACgGCCCCgagccgcAGAGuauuAGAc -3'
miRNA:   3'- cCUGuGCUGCUGgUGGGG-------UCUCu---UCU- -5'
15977 3' -54.6 NC_004065.1 + 8093 0.67 0.966421
Target:  5'- aGGuCGCGAgGAagaaacccaacaagUCGCCCCAGAGccGGg -3'
miRNA:   3'- -CCuGUGCUgCU--------------GGUGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 33648 0.67 0.964219
Target:  5'- gGGGCGCGcuuCGACCGUCCggcgcgCGGGGAGGGc -3'
miRNA:   3'- -CCUGUGCu--GCUGGUGGG------GUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 68369 0.67 0.964219
Target:  5'- -aACACGACGACgACCgaGGcGAAGAu -3'
miRNA:   3'- ccUGUGCUGCUGgUGGggUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 38167 0.67 0.964219
Target:  5'- aGACGCGGCGAuCCGCgCCAGcGGc-- -3'
miRNA:   3'- cCUGUGCUGCU-GGUGgGGUCuCUucu -5'
15977 3' -54.6 NC_004065.1 + 163199 0.67 0.963897
Target:  5'- uGGACAUcaccucgGACGACgGa-CCGGAGAAGGu -3'
miRNA:   3'- -CCUGUG-------CUGCUGgUggGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 197137 0.67 0.960901
Target:  5'- cGACAgGACGG-CAUCUCGGAcGAGGAg -3'
miRNA:   3'- cCUGUgCUGCUgGUGGGGUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 31087 0.67 0.960901
Target:  5'- ---gGCGGCGGCCuugGCCgCCAGGGuGGAg -3'
miRNA:   3'- ccugUGCUGCUGG---UGG-GGUCUCuUCU- -5'
15977 3' -54.6 NC_004065.1 + 48697 0.67 0.960901
Target:  5'- aGGACACua-GACUgucCCCCAGAugGAAGAc -3'
miRNA:   3'- -CCUGUGcugCUGGu--GGGGUCU--CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 77370 0.67 0.960901
Target:  5'- -aGCGCGACGAgCACCCggugaUGGuGGAGAa -3'
miRNA:   3'- ccUGUGCUGCUgGUGGG-----GUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 212221 0.67 0.960901
Target:  5'- cGGACAUcuauacucuACGACCAgcuCCCCGGGGGucuGGAc -3'
miRNA:   3'- -CCUGUGc--------UGCUGGU---GGGGUCUCU---UCU- -5'
15977 3' -54.6 NC_004065.1 + 71984 0.68 0.957376
Target:  5'- cGGAgGCGACGcaUGCCCUGGAGguGAg -3'
miRNA:   3'- -CCUgUGCUGCugGUGGGGUCUCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.