miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 552 0.69 0.915822
Target:  5'- cGACgaGCGGCGcCCGgCCCGGAGAGc- -3'
miRNA:   3'- cCUG--UGCUGCuGGUgGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 5978 0.71 0.841034
Target:  5'- cGACcugcCGGCGACgACCCgCAGAuGAAGAa -3'
miRNA:   3'- cCUGu---GCUGCUGgUGGG-GUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 8093 0.67 0.966421
Target:  5'- aGGuCGCGAgGAagaaacccaacaagUCGCCCCAGAGccGGg -3'
miRNA:   3'- -CCuGUGCUgCU--------------GGUGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 11182 0.71 0.863874
Target:  5'- cGACACGACGACCgACUacuaCAcgaucgucGAGAGGAg -3'
miRNA:   3'- cCUGUGCUGCUGG-UGGg---GU--------CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 12645 0.73 0.772793
Target:  5'- cGACACGGCGaACCGCaccagCCGGAGAuauGAa -3'
miRNA:   3'- cCUGUGCUGC-UGGUGg----GGUCUCUu--CU- -5'
15977 3' -54.6 NC_004065.1 + 16367 0.68 0.957012
Target:  5'- cGACgcuacuaGCGA-GACUACCCUAGAGAuGAc -3'
miRNA:   3'- cCUG-------UGCUgCUGGUGGGGUCUCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 16549 0.73 0.776419
Target:  5'- cGGuCGCGGCGACCGCUCCGacuacaccucagcccGAGAcuacGGAg -3'
miRNA:   3'- -CCuGUGCUGCUGGUGGGGU---------------CUCU----UCU- -5'
15977 3' -54.6 NC_004065.1 + 16973 0.69 0.915822
Target:  5'- -aGCACGACGGCCGuuUC-GAGGAGGu -3'
miRNA:   3'- ccUGUGCUGCUGGUggGGuCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 18552 0.66 0.98568
Target:  5'- cGACGcCGACGACCuCUCCGGcgacuccuccGAGGAg -3'
miRNA:   3'- cCUGU-GCUGCUGGuGGGGUCu---------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 19712 0.7 0.90413
Target:  5'- cGGAgGCGuGCGGCCAUCCgAGAuGggGc -3'
miRNA:   3'- -CCUgUGC-UGCUGGUGGGgUCU-CuuCu -5'
15977 3' -54.6 NC_004065.1 + 20765 0.72 0.808113
Target:  5'- gGGugAUGGCGAUCGCCCUAGcguacagcuccGAAGAc -3'
miRNA:   3'- -CCugUGCUGCUGGUGGGGUCu----------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 22515 0.68 0.949688
Target:  5'- aGGAC-CGACGACCGCUaucgcgCCGcGAGucuGGAc -3'
miRNA:   3'- -CCUGuGCUGCUGGUGG------GGU-CUCu--UCU- -5'
15977 3' -54.6 NC_004065.1 + 22749 0.71 0.863874
Target:  5'- uGGcuCAUGAgUGAUCACCCCGGAGGAu- -3'
miRNA:   3'- -CCu-GUGCU-GCUGGUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 23236 0.68 0.953639
Target:  5'- uGGACGCGACacgaGCgGCaUCAGAGggGGa -3'
miRNA:   3'- -CCUGUGCUGc---UGgUGgGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 26303 0.68 0.955159
Target:  5'- uGACgACGACGAugugaugaucauggaCC-CCCCGGAGAcGAc -3'
miRNA:   3'- cCUG-UGCUGCU---------------GGuGGGGUCUCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 27294 0.7 0.884276
Target:  5'- gGGACACGAgccgaaaCGGCCGuCCuaCCAGGuGAAGAg -3'
miRNA:   3'- -CCUGUGCU-------GCUGGU-GG--GGUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 29514 0.66 0.977886
Target:  5'- -uGCGCGGCGAuccgaucggaUCACUUCAGAGAccAGAg -3'
miRNA:   3'- ccUGUGCUGCU----------GGUGGGGUCUCU--UCU- -5'
15977 3' -54.6 NC_004065.1 + 30112 0.7 0.90413
Target:  5'- gGGACG-GACGAUCcugcuacacacCCCCGGGGAGGGc -3'
miRNA:   3'- -CCUGUgCUGCUGGu----------GGGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 30516 0.73 0.745034
Target:  5'- -cGCACGugGCGGCCGCCgCguGGGAAGAg -3'
miRNA:   3'- ccUGUGC--UGCUGGUGG-GguCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 31087 0.67 0.960901
Target:  5'- ---gGCGGCGGCCuugGCCgCCAGGGuGGAg -3'
miRNA:   3'- ccugUGCUGCUGG---UGG-GGUCUCuUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.