miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 32289 0.66 0.977886
Target:  5'- uGGAguCGGCGAUCGCCaaGGuGAAGc -3'
miRNA:   3'- -CCUguGCUGCUGGUGGggUCuCUUCu -5'
15977 3' -54.6 NC_004065.1 + 33648 0.67 0.964219
Target:  5'- gGGGCGCGcuuCGACCGUCCggcgcgCGGGGAGGGc -3'
miRNA:   3'- -CCUGUGCu--GCUGGUGGG------GUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 34463 0.71 0.841034
Target:  5'- uGGGCACGcaggucuCGGCUAUCCCGGAcGGAGc -3'
miRNA:   3'- -CCUGUGCu------GCUGGUGGGGUCU-CUUCu -5'
15977 3' -54.6 NC_004065.1 + 34772 0.67 0.972982
Target:  5'- uGACGCGAUaGCC-CgCCCGGcGAAGAu -3'
miRNA:   3'- cCUGUGCUGcUGGuG-GGGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 35196 0.66 0.983966
Target:  5'- cGACcgACGACGGUCAUCUCGGAGGAc- -3'
miRNA:   3'- cCUG--UGCUGCUGGUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 35539 0.69 0.936516
Target:  5'- cGGGCACGGuCGguuggauaACCAUCUCcGAGAAGGc -3'
miRNA:   3'- -CCUGUGCU-GC--------UGGUGGGGuCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 35838 0.75 0.646732
Target:  5'- cGugACGGCGgagucuuACCACCCCcGGGggGAu -3'
miRNA:   3'- cCugUGCUGC-------UGGUGGGGuCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 35989 0.69 0.926619
Target:  5'- uGGACAuguuCGACGGCgGCaa-GGAGAAGAg -3'
miRNA:   3'- -CCUGU----GCUGCUGgUGgggUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 37264 1.12 0.004709
Target:  5'- cGGACACGACGACCACCCCAGAGAAGAg -3'
miRNA:   3'- -CCUGUGCUGCUGGUGGGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 37543 0.66 0.983966
Target:  5'- aGGGCAaGAucucggugucCGugUACCUgAGAGAAGAc -3'
miRNA:   3'- -CCUGUgCU----------GCugGUGGGgUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 38167 0.67 0.964219
Target:  5'- aGACGCGGCGAuCCGCgCCAGcGGc-- -3'
miRNA:   3'- cCUGUGCUGCU-GGUGgGGUCuCUucu -5'
15977 3' -54.6 NC_004065.1 + 38201 0.74 0.70676
Target:  5'- --cCACGACGGCacugauaGCCCCGGGGggGu -3'
miRNA:   3'- ccuGUGCUGCUGg------UGGGGUCUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 38719 0.69 0.915822
Target:  5'- -cGCGCGGcCGGcaccauccugcuCCGCCUCAGAGAGGGc -3'
miRNA:   3'- ccUGUGCU-GCU------------GGUGGGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 40238 0.72 0.790722
Target:  5'- uGGACgACGACGACauccCCCCGGGGuuucuGGGg -3'
miRNA:   3'- -CCUG-UGCUGCUGgu--GGGGUCUCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 42651 0.69 0.93168
Target:  5'- uGGAC-CGugGAUCcCCCCgAGAGAuuguuAGAc -3'
miRNA:   3'- -CCUGuGCugCUGGuGGGG-UCUCU-----UCU- -5'
15977 3' -54.6 NC_004065.1 + 43875 0.7 0.897952
Target:  5'- cGGugGCGgccuccACGGCCACCCuCAGGGu--- -3'
miRNA:   3'- -CCugUGC------UGCUGGUGGG-GUCUCuucu -5'
15977 3' -54.6 NC_004065.1 + 45856 0.83 0.278816
Target:  5'- gGGACGCGAUGGCCGCUCCGacGGAGGAa -3'
miRNA:   3'- -CCUGUGCUGCUGGUGGGGUc-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 46366 0.72 0.799489
Target:  5'- gGGACACGAUgugGGCCACCUCAGccGGucccuGGAc -3'
miRNA:   3'- -CCUGUGCUG---CUGGUGGGGUC--UCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 48697 0.67 0.960901
Target:  5'- aGGACACua-GACUgucCCCCAGAugGAAGAc -3'
miRNA:   3'- -CCUGUGcugCUGGu--GGGGUCU--CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 50772 0.66 0.983966
Target:  5'- aGACACGGCGaAUCGCaCCgAGuuGAAGGc -3'
miRNA:   3'- cCUGUGCUGC-UGGUG-GGgUCu-CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.