miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 229578 0.67 0.972982
Target:  5'- cGGACguuacgccGCGAgGGCgGCUCCAGGGGGu- -3'
miRNA:   3'- -CCUG--------UGCUgCUGgUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 229542 0.71 0.841034
Target:  5'- cGGACGCGGCG-CgCGgCCCGGAGGc-- -3'
miRNA:   3'- -CCUGUGCUGCuG-GUgGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 228100 0.68 0.949688
Target:  5'- uGGAgACGACG-CCGCagacuggaCCAGAGAu-- -3'
miRNA:   3'- -CCUgUGCUGCuGGUGg-------GGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 227534 0.66 0.983966
Target:  5'- uGGCAUGuuaGACCGCgaCCCGGAGGucuuAGAa -3'
miRNA:   3'- cCUGUGCug-CUGGUG--GGGUCUCU----UCU- -5'
15977 3' -54.6 NC_004065.1 + 225066 0.75 0.667532
Target:  5'- cGugAUGGCGGCCGCUCCAGgAGAacuGGAu -3'
miRNA:   3'- cCugUGCUGCUGGUGGGGUC-UCU---UCU- -5'
15977 3' -54.6 NC_004065.1 + 222455 0.66 0.98568
Target:  5'- cGGACcCGACGACgCACgauaCgCAGAcGggGAg -3'
miRNA:   3'- -CCUGuGCUGCUG-GUGg---G-GUCU-CuuCU- -5'
15977 3' -54.6 NC_004065.1 + 212221 0.67 0.960901
Target:  5'- cGGACAUcuauacucuACGACCAgcuCCCCGGGGGucuGGAc -3'
miRNA:   3'- -CCUGUGc--------UGCUGGU---GGGGUCUCU---UCU- -5'
15977 3' -54.6 NC_004065.1 + 211533 0.67 0.970254
Target:  5'- cGGugGCGACGA-CGCCCCGucGuuGGu -3'
miRNA:   3'- -CCugUGCUGCUgGUGGGGUcuCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 210321 0.66 0.983966
Target:  5'- uGAC-CGuaGCGuACCAUCCCgucGGGGAAGAa -3'
miRNA:   3'- cCUGuGC--UGC-UGGUGGGG---UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 209191 0.67 0.967335
Target:  5'- cGGAC-CGGCgcuuuccucGACgACCCUcGAGAAGGa -3'
miRNA:   3'- -CCUGuGCUG---------CUGgUGGGGuCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 208226 0.69 0.915822
Target:  5'- aGGuGCACGuCGACCACgCCGGAuGAAc- -3'
miRNA:   3'- -CC-UGUGCuGCUGGUGgGGUCU-CUUcu -5'
15977 3' -54.6 NC_004065.1 + 207985 0.73 0.772793
Target:  5'- gGGAUACcGCGGCCugCCCGGGGccGu -3'
miRNA:   3'- -CCUGUGcUGCUGGugGGGUCUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 205526 0.69 0.921332
Target:  5'- --cCACGAUGACCGCCCuCGGAucGAAa- -3'
miRNA:   3'- ccuGUGCUGCUGGUGGG-GUCU--CUUcu -5'
15977 3' -54.6 NC_004065.1 + 205009 0.66 0.98568
Target:  5'- gGGACACGGCcccuuGCCGCgCCCAcGGAc-- -3'
miRNA:   3'- -CCUGUGCUGc----UGGUG-GGGUcUCUucu -5'
15977 3' -54.6 NC_004065.1 + 202191 0.69 0.931184
Target:  5'- cGGCACcACGgccagccACCACCCCGGGGGGu- -3'
miRNA:   3'- cCUGUGcUGC-------UGGUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 201029 0.68 0.940678
Target:  5'- -cGCGCGGCGccucgccACCGCCgCCGGAGAc-- -3'
miRNA:   3'- ccUGUGCUGC-------UGGUGG-GGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 199884 0.66 0.98568
Target:  5'- -aGCACGAgCGGCCGgucgcccuCCCCGGGGGu-- -3'
miRNA:   3'- ccUGUGCU-GCUGGU--------GGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 198003 0.71 0.833054
Target:  5'- gGGACACugcGCGAUgGCCUCGGAGgcGGu -3'
miRNA:   3'- -CCUGUGc--UGCUGgUGGGGUCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 197137 0.67 0.960901
Target:  5'- cGACAgGACGG-CAUCUCGGAcGAGGAg -3'
miRNA:   3'- cCUGUgCUGCUgGUGGGGUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 196690 0.67 0.975524
Target:  5'- cGGAacccCGACGGgauCCGCCUCuucGAGGAGAa -3'
miRNA:   3'- -CCUgu--GCUGCU---GGUGGGGu--CUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.