miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 11182 0.71 0.863874
Target:  5'- cGACACGACGACCgACUacuaCAcgaucgucGAGAGGAg -3'
miRNA:   3'- cCUGUGCUGCUGG-UGGg---GU--------CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 110191 0.73 0.762727
Target:  5'- cGGcCGCGACGcGCCGCCgCCcgucgagAGGGAAGAg -3'
miRNA:   3'- -CCuGUGCUGC-UGGUGG-GG-------UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 12645 0.73 0.772793
Target:  5'- cGACACGGCGaACCGCaccagCCGGAGAuauGAa -3'
miRNA:   3'- cCUGUGCUGC-UGGUGg----GGUCUCUu--CU- -5'
15977 3' -54.6 NC_004065.1 + 89353 0.72 0.790722
Target:  5'- aGGCACGACaGGCCGCaggCCGG-GAAGAg -3'
miRNA:   3'- cCUGUGCUG-CUGGUGg--GGUCuCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 46366 0.72 0.799489
Target:  5'- gGGACACGAUgugGGCCACCUCAGccGGucccuGGAc -3'
miRNA:   3'- -CCUGUGCUG---CUGGUGGGGUC--UCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 152326 0.72 0.799489
Target:  5'- gGGACgAUGACGGCUucgACCUCgaGGAGGAGAu -3'
miRNA:   3'- -CCUG-UGCUGCUGG---UGGGG--UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 20765 0.72 0.808113
Target:  5'- gGGugAUGGCGAUCGCCCUAGcguacagcuccGAAGAc -3'
miRNA:   3'- -CCugUGCUGCUGGUGGGGUCu----------CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 34463 0.71 0.841034
Target:  5'- uGGGCACGcaggucuCGGCUAUCCCGGAcGGAGc -3'
miRNA:   3'- -CCUGUGCu------GCUGGUGGGGUCU-CUUCu -5'
15977 3' -54.6 NC_004065.1 + 5978 0.71 0.841034
Target:  5'- cGACcugcCGGCGACgACCCgCAGAuGAAGAa -3'
miRNA:   3'- cCUGu---GCUGCUGgUGGG-GUCU-CUUCU- -5'
15977 3' -54.6 NC_004065.1 + 103920 0.73 0.754392
Target:  5'- aGGuCGCGACGACUGCUCUgacGAGGAGGu -3'
miRNA:   3'- -CCuGUGCUGCUGGUGGGGu--CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 67821 0.73 0.735584
Target:  5'- cGGGCGCcgGACGuGCCGCCgCAGcAGAAGGg -3'
miRNA:   3'- -CCUGUG--CUGC-UGGUGGgGUC-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 110493 0.74 0.687232
Target:  5'- -aGCA-GACGGCCGCCCCGGAcAAGGa -3'
miRNA:   3'- ccUGUgCUGCUGGUGGGGUCUcUUCU- -5'
15977 3' -54.6 NC_004065.1 + 45856 0.83 0.278816
Target:  5'- gGGACGCGAUGGCCGCUCCGacGGAGGAa -3'
miRNA:   3'- -CCUGUGCUGCUGGUGGGGUc-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 77984 0.81 0.348281
Target:  5'- uGGcCGCGGCGAgCCGCCCCGGgacGGAGGAg -3'
miRNA:   3'- -CCuGUGCUGCU-GGUGGGGUC---UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 64918 0.79 0.42925
Target:  5'- cGGGCGgGACG-CCGCCUCAGAGAcGAc -3'
miRNA:   3'- -CCUGUgCUGCuGGUGGGGUCUCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 64603 0.77 0.558829
Target:  5'- -cACGCGGCGAcgcCCGCCCUAGAGAcGGAc -3'
miRNA:   3'- ccUGUGCUGCU---GGUGGGGUCUCU-UCU- -5'
15977 3' -54.6 NC_004065.1 + 173032 0.76 0.578406
Target:  5'- cGGugcucuCAUGGCGGCCACggccaucaggauCCCGGAGAGGAa -3'
miRNA:   3'- -CCu-----GUGCUGCUGGUG------------GGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 145683 0.76 0.595162
Target:  5'- cGGAUuCGACGACCGCCgCUaacgggcggggguaGGAGGAGAg -3'
miRNA:   3'- -CCUGuGCUGCUGGUGG-GG--------------UCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 112036 0.75 0.637799
Target:  5'- aGGACgACGACGACaagauCCCCAccgucuguGAGAAGAc -3'
miRNA:   3'- -CCUG-UGCUGCUGgu---GGGGU--------CUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 225066 0.75 0.667532
Target:  5'- cGugAUGGCGGCCGCUCCAGgAGAacuGGAu -3'
miRNA:   3'- cCugUGCUGCUGGUGGGGUC-UCU---UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.