miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 3' -54.6 NC_004065.1 + 80920 0.79 0.44673
Target:  5'- aGGCACGGCGAauuaCCGuCCCCAGcAGAAGAc -3'
miRNA:   3'- cCUGUGCUGCU----GGU-GGGGUC-UCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 22749 0.71 0.863874
Target:  5'- uGGcuCAUGAgUGAUCACCCCGGAGGAu- -3'
miRNA:   3'- -CCu-GUGCU-GCUGGUGGGGUCUCUUcu -5'
15977 3' -54.6 NC_004065.1 + 109709 0.71 0.871102
Target:  5'- cGGAgCACGACGAg-GCCCUAGAGAu-- -3'
miRNA:   3'- -CCU-GUGCUGCUggUGGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 205009 0.66 0.98568
Target:  5'- gGGACACGGCcccuuGCCGCgCCCAcGGAc-- -3'
miRNA:   3'- -CCUGUGCUGc----UGGUG-GGGUcUCUucu -5'
15977 3' -54.6 NC_004065.1 + 38201 0.74 0.70676
Target:  5'- --cCACGACGGCacugauaGCCCCGGGGggGu -3'
miRNA:   3'- ccuGUGCUGCUGg------UGGGGUCUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 172636 0.74 0.726049
Target:  5'- cGcCGUGACGACCGCgagCCCGGAGAAGGa -3'
miRNA:   3'- cCuGUGCUGCUGGUG---GGGUCUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 207985 0.73 0.772793
Target:  5'- gGGAUACcGCGGCCugCCCGGGGccGu -3'
miRNA:   3'- -CCUGUGcUGCUGGugGGGUCUCuuCu -5'
15977 3' -54.6 NC_004065.1 + 16549 0.73 0.776419
Target:  5'- cGGuCGCGGCGACCGCUCCGacuacaccucagcccGAGAcuacGGAg -3'
miRNA:   3'- -CCuGUGCUGCUGGUGGGGU---------------CUCU----UCU- -5'
15977 3' -54.6 NC_004065.1 + 120060 0.72 0.824903
Target:  5'- aGGACGuCGucggaGACCGCgCCGGAGAGGc -3'
miRNA:   3'- -CCUGU-GCug---CUGGUGgGGUCUCUUCu -5'
15977 3' -54.6 NC_004065.1 + 102494 0.71 0.863874
Target:  5'- aGGGCACGGCGACgggGCCCaugagcaggcggCAGAGGAcGAc -3'
miRNA:   3'- -CCUGUGCUGCUGg--UGGG------------GUCUCUU-CU- -5'
15977 3' -54.6 NC_004065.1 + 97657 0.71 0.841034
Target:  5'- cGACGCGACGGCCugCCCGu------ -3'
miRNA:   3'- cCUGUGCUGCUGGugGGGUcucuucu -5'
15977 3' -54.6 NC_004065.1 + 102023 0.72 0.816587
Target:  5'- uGGCGCGGCgGGCCACCUCGGuGAc-- -3'
miRNA:   3'- cCUGUGCUG-CUGGUGGGGUCuCUucu -5'
15977 3' -54.6 NC_004065.1 + 35838 0.75 0.646732
Target:  5'- cGugACGGCGgagucuuACCACCCCcGGGggGAu -3'
miRNA:   3'- cCugUGCUGC-------UGGUGGGGuCUCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 229542 0.71 0.841034
Target:  5'- cGGACGCGGCG-CgCGgCCCGGAGGc-- -3'
miRNA:   3'- -CCUGUGCUGCuG-GUgGGGUCUCUucu -5'
15977 3' -54.6 NC_004065.1 + 119843 0.75 0.647724
Target:  5'- cGGCGCGucGCGGCCGCCgCAGAGGucggGGAa -3'
miRNA:   3'- cCUGUGC--UGCUGGUGGgGUCUCU----UCU- -5'
15977 3' -54.6 NC_004065.1 + 40238 0.72 0.790722
Target:  5'- uGGACgACGACGACauccCCCCGGGGuuucuGGGg -3'
miRNA:   3'- -CCUG-UGCUGCUGgu--GGGGUCUCu----UCU- -5'
15977 3' -54.6 NC_004065.1 + 162286 0.71 0.848834
Target:  5'- cGGACGCGGCG-CCGCUCggCAaAGGAGAa -3'
miRNA:   3'- -CCUGUGCUGCuGGUGGG--GUcUCUUCU- -5'
15977 3' -54.6 NC_004065.1 + 104309 0.71 0.871102
Target:  5'- -cGCGCaGGCGGgcCCGCCCCAG-GggGAu -3'
miRNA:   3'- ccUGUG-CUGCU--GGUGGGGUCuCuuCU- -5'
15977 3' -54.6 NC_004065.1 + 120106 0.75 0.657638
Target:  5'- gGGACGCGACGGCgGCCgCGGcGGAcGAg -3'
miRNA:   3'- -CCUGUGCUGCUGgUGGgGUC-UCUuCU- -5'
15977 3' -54.6 NC_004065.1 + 30516 0.73 0.745034
Target:  5'- -cGCACGugGCGGCCGCCgCguGGGAAGAg -3'
miRNA:   3'- ccUGUGC--UGCUGGUGG-GguCUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.