miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 135066 0.66 0.763855
Target:  5'- cGGCaGCCgc-GGAGCgggCCCCGcagcgccaguaGUCGGCu -3'
miRNA:   3'- -CCGcCGGaguUCUCG---GGGGC-----------CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 77013 0.66 0.763855
Target:  5'- aGGCGGCgugcugcgacCUCGacucGGAGCUggCgCGGaUCGGCg -3'
miRNA:   3'- -CCGCCG----------GAGU----UCUCGG--GgGCC-AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 224037 0.66 0.763855
Target:  5'- cGuaGGCC-CGAGGGCCaugaCGGcCGGUg -3'
miRNA:   3'- -CcgCCGGaGUUCUCGGgg--GCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 184918 0.66 0.763855
Target:  5'- gGGUGG-CUCGGGAGCggCCGGgagaCGGUc -3'
miRNA:   3'- -CCGCCgGAGUUCUCGggGGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 137536 0.66 0.763855
Target:  5'- aGGCGGgaCUUCcGGucAGCCUCUGGccCGGCa -3'
miRNA:   3'- -CCGCC--GGAGuUC--UCGGGGGCCa-GCCG- -5'
15977 5' -62.7 NC_004065.1 + 116150 0.66 0.755046
Target:  5'- cGGCGG-CUCGGG-GCCg--GGUCGGUa -3'
miRNA:   3'- -CCGCCgGAGUUCuCGGgggCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 46511 0.66 0.755046
Target:  5'- cGCGaGCCguUCGAGA-CCCUguCGGUCGuGCa -3'
miRNA:   3'- cCGC-CGG--AGUUCUcGGGG--GCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 24735 0.66 0.755046
Target:  5'- aGCGGCgagucuggcgcaCUCGuugGGcGGCCCCCcGUUGGCc -3'
miRNA:   3'- cCGCCG------------GAGU---UC-UCGGGGGcCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 31089 0.66 0.755046
Target:  5'- cGGCGGCCUU---GGCCgCCagGGUgGaGCg -3'
miRNA:   3'- -CCGCCGGAGuucUCGG-GGg-CCAgC-CG- -5'
15977 5' -62.7 NC_004065.1 + 136037 0.66 0.755046
Target:  5'- cGCaGCCUCuucuGGGUgcuUCCCGG-CGGCu -3'
miRNA:   3'- cCGcCGGAGuu--CUCG---GGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 94715 0.66 0.755046
Target:  5'- gGGCGG-CUCGAGcgGGCCgaagUCGG-CGGCg -3'
miRNA:   3'- -CCGCCgGAGUUC--UCGGg---GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 154437 0.66 0.755046
Target:  5'- aGCGGCCUC-----CCCCCGc-CGGCg -3'
miRNA:   3'- cCGCCGGAGuucucGGGGGCcaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 72905 0.66 0.755046
Target:  5'- cGCGaugauGCCcccgcUgAAGGcGCCCCCGG-CGGCg -3'
miRNA:   3'- cCGC-----CGG-----AgUUCU-CGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 104782 0.66 0.746145
Target:  5'- cGGCGGCCUCGAGAcggGCaucgagCUGGUgaCGcGCu -3'
miRNA:   3'- -CCGCCGGAGUUCU---CGgg----GGCCA--GC-CG- -5'
15977 5' -62.7 NC_004065.1 + 103707 0.66 0.746145
Target:  5'- gGGCGGCg--GGGAGCgCCUGG-CGGg -3'
miRNA:   3'- -CCGCCGgagUUCUCGgGGGCCaGCCg -5'
15977 5' -62.7 NC_004065.1 + 195363 0.66 0.746145
Target:  5'- aGGUGGCCaacacgauagCGGGAuuCCUCCGGgacCGGCu -3'
miRNA:   3'- -CCGCCGGa---------GUUCUc-GGGGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 139833 0.66 0.746145
Target:  5'- -aCGGCCU--GGAGUCCCgGGa-GGCg -3'
miRNA:   3'- ccGCCGGAguUCUCGGGGgCCagCCG- -5'
15977 5' -62.7 NC_004065.1 + 192813 0.66 0.743457
Target:  5'- cGGCGGCgUCugggcgcugcgcuuGAGGcagccGCUCUCGGUgaCGGCg -3'
miRNA:   3'- -CCGCCGgAG--------------UUCU-----CGGGGGCCA--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 203137 0.66 0.737158
Target:  5'- aGCGGCCUCuGGA-CCggCCGG-CGGUg -3'
miRNA:   3'- cCGCCGGAGuUCUcGGg-GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 6749 0.66 0.737158
Target:  5'- cGGCGGCaCUCGGGucGGUCCUCguGGUCcucGCu -3'
miRNA:   3'- -CCGCCG-GAGUUC--UCGGGGG--CCAGc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.