Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15977 | 5' | -62.7 | NC_004065.1 | + | 72905 | 0.66 | 0.755046 |
Target: 5'- cGCGaugauGCCcccgcUgAAGGcGCCCCCGG-CGGCg -3' miRNA: 3'- cCGC-----CGG-----AgUUCU-CGGGGGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 4381 | 0.66 | 0.718958 |
Target: 5'- cGGCGGCggCGGGAGCCggagugcugUUCGGagCGGUg -3' miRNA: 3'- -CCGCCGgaGUUCUCGG---------GGGCCa-GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 102628 | 0.66 | 0.709759 |
Target: 5'- -aCGGCCUgggagaggCGGGAGUCCUCGaaCGGCg -3' miRNA: 3'- ccGCCGGA--------GUUCUCGGGGGCcaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 184918 | 0.66 | 0.763855 |
Target: 5'- gGGUGG-CUCGGGAGCggCCGGgagaCGGUc -3' miRNA: 3'- -CCGCCgGAGUUCUCGggGGCCa---GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 31089 | 0.66 | 0.755046 |
Target: 5'- cGGCGGCCUU---GGCCgCCagGGUgGaGCg -3' miRNA: 3'- -CCGCCGGAGuucUCGG-GGg-CCAgC-CG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 46511 | 0.66 | 0.755046 |
Target: 5'- cGCGaGCCguUCGAGA-CCCUguCGGUCGuGCa -3' miRNA: 3'- cCGC-CGG--AGUUCUcGGGG--GCCAGC-CG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 4446 | 0.66 | 0.709759 |
Target: 5'- --gGGCCUCGAGcucGUCgCgGGUCGGUc -3' miRNA: 3'- ccgCCGGAGUUCu--CGGgGgCCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 224037 | 0.66 | 0.763855 |
Target: 5'- cGuaGGCC-CGAGGGCCaugaCGGcCGGUg -3' miRNA: 3'- -CcgCCGGaGUUCUCGGgg--GCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 77013 | 0.66 | 0.763855 |
Target: 5'- aGGCGGCgugcugcgacCUCGacucGGAGCUggCgCGGaUCGGCg -3' miRNA: 3'- -CCGCCG----------GAGU----UCUCGG--GgGCC-AGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 137536 | 0.66 | 0.763855 |
Target: 5'- aGGCGGgaCUUCcGGucAGCCUCUGGccCGGCa -3' miRNA: 3'- -CCGCC--GGAGuUC--UCGGGGGCCa-GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 41266 | 0.66 | 0.709759 |
Target: 5'- gGGCGGUCgCGAucG-CCCUGGUgGGCu -3' miRNA: 3'- -CCGCCGGaGUUcuCgGGGGCCAgCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 24735 | 0.66 | 0.755046 |
Target: 5'- aGCGGCgagucuggcgcaCUCGuugGGcGGCCCCCcGUUGGCc -3' miRNA: 3'- cCGCCG------------GAGU---UC-UCGGGGGcCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 116150 | 0.66 | 0.755046 |
Target: 5'- cGGCGG-CUCGGG-GCCg--GGUCGGUa -3' miRNA: 3'- -CCGCCgGAGUUCuCGGgggCCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 28454 | 0.66 | 0.718958 |
Target: 5'- aGGCaGGCUUCGAaGGCUacucgCUCGaGUCGGCc -3' miRNA: 3'- -CCG-CCGGAGUUcUCGG-----GGGC-CAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 128768 | 0.66 | 0.728093 |
Target: 5'- cGGCaGCgUUGAGGGCgCCgucgCCGG-CGGCa -3' miRNA: 3'- -CCGcCGgAGUUCUCG-GG----GGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 136037 | 0.66 | 0.755046 |
Target: 5'- cGCaGCCUCuucuGGGUgcuUCCCGG-CGGCu -3' miRNA: 3'- cCGcCGGAGuu--CUCG---GGGGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 93898 | 0.66 | 0.737158 |
Target: 5'- -cCGGCUUCccuccccGAGCUCCCGGUCcccGCu -3' miRNA: 3'- ccGCCGGAGuu-----CUCGGGGGCCAGc--CG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 120559 | 0.66 | 0.728093 |
Target: 5'- cGGCGGUCggcgCGAGcgggcgGGaCCUCCGGcgccggucUCGGCc -3' miRNA: 3'- -CCGCCGGa---GUUC------UC-GGGGGCC--------AGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 31002 | 0.66 | 0.728093 |
Target: 5'- gGGCGcugaGCCacuguUCGAGcuuGCCCUCGGccgCGGCc -3' miRNA: 3'- -CCGC----CGG-----AGUUCu--CGGGGGCCa--GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 149715 | 0.66 | 0.709759 |
Target: 5'- cGCGGCCgCGccGGCCCUCGGacucauagCGGUc -3' miRNA: 3'- cCGCCGGaGUucUCGGGGGCCa-------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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