miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 120559 0.66 0.728093
Target:  5'- cGGCGGUCggcgCGAGcgggcgGGaCCUCCGGcgccggucUCGGCc -3'
miRNA:   3'- -CCGCCGGa---GUUC------UC-GGGGGCC--------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 28454 0.66 0.718958
Target:  5'- aGGCaGGCUUCGAaGGCUacucgCUCGaGUCGGCc -3'
miRNA:   3'- -CCG-CCGGAGUUcUCGG-----GGGC-CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 93898 0.66 0.737158
Target:  5'- -cCGGCUUCccuccccGAGCUCCCGGUCcccGCu -3'
miRNA:   3'- ccGCCGGAGuu-----CUCGGGGGCCAGc--CG- -5'
15977 5' -62.7 NC_004065.1 + 128768 0.66 0.728093
Target:  5'- cGGCaGCgUUGAGGGCgCCgucgCCGG-CGGCa -3'
miRNA:   3'- -CCGcCGgAGUUCUCG-GG----GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 149715 0.66 0.709759
Target:  5'- cGCGGCCgCGccGGCCCUCGGacucauagCGGUc -3'
miRNA:   3'- cCGCCGGaGUucUCGGGGGCCa-------GCCG- -5'
15977 5' -62.7 NC_004065.1 + 154437 0.66 0.755046
Target:  5'- aGCGGCCUC-----CCCCCGc-CGGCg -3'
miRNA:   3'- cCGCCGGAGuucucGGGGGCcaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 6749 0.66 0.737158
Target:  5'- cGGCGGCaCUCGGGucGGUCCUCguGGUCcucGCu -3'
miRNA:   3'- -CCGCCG-GAGUUC--UCGGGGG--CCAGc--CG- -5'
15977 5' -62.7 NC_004065.1 + 103707 0.66 0.746145
Target:  5'- gGGCGGCg--GGGAGCgCCUGG-CGGg -3'
miRNA:   3'- -CCGCCGgagUUCUCGgGGGCCaGCCg -5'
15977 5' -62.7 NC_004065.1 + 102628 0.66 0.709759
Target:  5'- -aCGGCCUgggagaggCGGGAGUCCUCGaaCGGCg -3'
miRNA:   3'- ccGCCGGA--------GUUCUCGGGGGCcaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 136037 0.66 0.755046
Target:  5'- cGCaGCCUCuucuGGGUgcuUCCCGG-CGGCu -3'
miRNA:   3'- cCGcCGGAGuu--CUCG---GGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 24735 0.66 0.755046
Target:  5'- aGCGGCgagucuggcgcaCUCGuugGGcGGCCCCCcGUUGGCc -3'
miRNA:   3'- cCGCCG------------GAGU---UC-UCGGGGGcCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 72905 0.66 0.755046
Target:  5'- cGCGaugauGCCcccgcUgAAGGcGCCCCCGG-CGGCg -3'
miRNA:   3'- cCGC-----CGG-----AgUUCU-CGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 46511 0.66 0.755046
Target:  5'- cGCGaGCCguUCGAGA-CCCUguCGGUCGuGCa -3'
miRNA:   3'- cCGC-CGG--AGUUCUcGGGG--GCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 116150 0.66 0.755046
Target:  5'- cGGCGG-CUCGGG-GCCg--GGUCGGUa -3'
miRNA:   3'- -CCGCCgGAGUUCuCGGgggCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 169563 0.67 0.679043
Target:  5'- cGCGGCagUCGAGAGCuccgucgacgugguCCUCGGucUCGGUu -3'
miRNA:   3'- cCGCCGg-AGUUCUCG--------------GGGGCC--AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 136425 0.67 0.700504
Target:  5'- uGGgGGCC-CGGuGAGCCga-GGUCGGUa -3'
miRNA:   3'- -CCgCCGGaGUU-CUCGGgggCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 118229 0.67 0.681854
Target:  5'- cGGCGGUCaucggagccgUCGacggacgcguGGAGCUCgCCGG-CGGCc -3'
miRNA:   3'- -CCGCCGG----------AGU----------UCUCGGG-GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 130603 0.67 0.6912
Target:  5'- aGGCGGCgUCugccgcucGGGCCCCUGcugCGaGCg -3'
miRNA:   3'- -CCGCCGgAGuu------CUCGGGGGCca-GC-CG- -5'
15977 5' -62.7 NC_004065.1 + 5548 0.67 0.700504
Target:  5'- aGGCGGa--CAAGguagcuaccAGCUCCCGGUUGaGCu -3'
miRNA:   3'- -CCGCCggaGUUC---------UCGGGGGCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 87164 0.67 0.700504
Target:  5'- cGgGGUCgucCAGGAGCCCCugcaccgcgCGGUCGucGCg -3'
miRNA:   3'- cCgCCGGa--GUUCUCGGGG---------GCCAGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.