miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 37301 1.13 0.000681
Target:  5'- cGGCGGCCUCAAGAGCCCCCGGUCGGCa -3'
miRNA:   3'- -CCGCCGGAGUUCUCGGGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 139896 0.82 0.092555
Target:  5'- aGGUGGCCgc-GGGGCCUCCGGcCGGCg -3'
miRNA:   3'- -CCGCCGGaguUCUCGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 150025 0.76 0.22227
Target:  5'- uGGCGGCUcggaAGGAggaacuGCCCgCGGUCGGCg -3'
miRNA:   3'- -CCGCCGGag--UUCU------CGGGgGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 127330 0.76 0.248623
Target:  5'- uGCGcGCgUCAAGAGCgCUCCGGUCuGCg -3'
miRNA:   3'- cCGC-CGgAGUUCUCG-GGGGCCAGcCG- -5'
15977 5' -62.7 NC_004065.1 + 40151 0.74 0.289789
Target:  5'- cGGCGGCCUCGuu-GUccaccauuaUCCCGGUCGGa -3'
miRNA:   3'- -CCGCCGGAGUucuCG---------GGGGCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 63057 0.74 0.309005
Target:  5'- gGGCGGCgCagucgCAGGAGUCgCCGGUcgcCGGCg -3'
miRNA:   3'- -CCGCCG-Ga----GUUCUCGGgGGCCA---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 59572 0.74 0.309005
Target:  5'- cGGCGGCagcgaAGGcGCCUCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGgag--UUCuCGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 229595 0.74 0.315622
Target:  5'- gGGCGGCUcCAGGGGguucacCCCCCGGgcgCGGa -3'
miRNA:   3'- -CCGCCGGaGUUCUC------GGGGGCCa--GCCg -5'
15977 5' -62.7 NC_004065.1 + 121601 0.73 0.357559
Target:  5'- -aCGGCC-CGGGAcCCCCCGGUagGGCa -3'
miRNA:   3'- ccGCCGGaGUUCUcGGGGGCCAg-CCG- -5'
15977 5' -62.7 NC_004065.1 + 65440 0.73 0.37238
Target:  5'- cGGCGGCCgugguggcUCuGGAGCgCgaagCGGUCGGCg -3'
miRNA:   3'- -CCGCCGG--------AGuUCUCGgGg---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 78294 0.72 0.379946
Target:  5'- aGCGGCuCUCGAGGGCCUcggaCUGcGUgGGCg -3'
miRNA:   3'- cCGCCG-GAGUUCUCGGG----GGC-CAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 196635 0.72 0.411218
Target:  5'- gGGCGagcGCCUCGAGAGgCUCCGcGcgcagaagaUCGGCa -3'
miRNA:   3'- -CCGC---CGGAGUUCUCgGGGGC-C---------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 20474 0.72 0.419282
Target:  5'- cGGCcgGGCCUCcuucAGUCCCgCGGUCGGg -3'
miRNA:   3'- -CCG--CCGGAGuuc-UCGGGG-GCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 118175 0.71 0.427442
Target:  5'- cGGCGGCCgUCAcGGcuGCCgCCguuCGGUUGGCg -3'
miRNA:   3'- -CCGCCGG-AGUuCU--CGG-GG---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 105480 0.71 0.435694
Target:  5'- aGGCGGCCg-AGGAGCUguuccaCCUGGU-GGCg -3'
miRNA:   3'- -CCGCCGGagUUCUCGG------GGGCCAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 132819 0.71 0.435694
Target:  5'- cGGCguagGGCUUCuuGAuGCUCCCGGgCGGCg -3'
miRNA:   3'- -CCG----CCGGAGuuCU-CGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 100610 0.71 0.435694
Target:  5'- aGGCGcacaGCUUCAGcAGCCCCaucaGcGUCGGCg -3'
miRNA:   3'- -CCGC----CGGAGUUcUCGGGGg---C-CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 21955 0.71 0.452471
Target:  5'- uGGCGGCC---AGGGCCgUCG-UCGGCa -3'
miRNA:   3'- -CCGCCGGaguUCUCGGgGGCcAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 30100 0.71 0.469594
Target:  5'- aGCGGUagCGAGAGCugcagCCCCGG-CGGCc -3'
miRNA:   3'- cCGCCGgaGUUCUCG-----GGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 141041 0.7 0.478278
Target:  5'- uGGaCGGCgUCAAGGcGCCCCaGGU-GGCc -3'
miRNA:   3'- -CC-GCCGgAGUUCU-CGGGGgCCAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.