miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 203096 0.7 0.478278
Target:  5'- aGCGGUCUCuuGAGCCUucuUCGGggucCGGCg -3'
miRNA:   3'- cCGCCGGAGuuCUCGGG---GGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 141041 0.7 0.478278
Target:  5'- uGGaCGGCgUCAAGGcGCCCCaGGU-GGCc -3'
miRNA:   3'- -CC-GCCGgAGUUCU-CGGGGgCCAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 120115 0.7 0.483527
Target:  5'- cGGCGGCCgcggcggacgagcCGGGAcCCCCCGacgCGGCc -3'
miRNA:   3'- -CCGCCGGa------------GUUCUcGGGGGCca-GCCG- -5'
15977 5' -62.7 NC_004065.1 + 89173 0.7 0.487041
Target:  5'- cGGCGGCCUUcAGGGCCgUCuucuuGUCGGa -3'
miRNA:   3'- -CCGCCGGAGuUCUCGGgGGc----CAGCCg -5'
15977 5' -62.7 NC_004065.1 + 182719 0.7 0.49588
Target:  5'- cGGauCGGCCUCAcgggcgacgccGGGGCCaCCGacacGUCGGCg -3'
miRNA:   3'- -CC--GCCGGAGU-----------UCUCGGgGGC----CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 2949 0.7 0.503896
Target:  5'- gGGCucGGCuCUCGAGAGCCaagaccuCCUGGgaaagcgaccucUCGGCg -3'
miRNA:   3'- -CCG--CCG-GAGUUCUCGG-------GGGCC------------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 36109 0.7 0.513768
Target:  5'- uGGCGGCaaCGGGGccGCUgCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGgaGUUCU--CGGgGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 93996 0.7 0.513768
Target:  5'- uGGcCGGCUUUucGGGgUCCCGGUucCGGCu -3'
miRNA:   3'- -CC-GCCGGAGuuCUCgGGGGCCA--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 229442 0.7 0.517378
Target:  5'- cGGCGGCgCUCGAGgaacgcucgcuucacGGCuCUCCGGgccgGGCg -3'
miRNA:   3'- -CCGCCG-GAGUUC---------------UCG-GGGGCCag--CCG- -5'
15977 5' -62.7 NC_004065.1 + 143276 0.7 0.522811
Target:  5'- gGGCGGCagcuUCAAGGGCCga-GG-CGGCg -3'
miRNA:   3'- -CCGCCGg---AGUUCUCGGgggCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 120519 0.7 0.531915
Target:  5'- uGGCGccGCUcgacgaugUCGAGGGUCUCCGGUgugcCGGCg -3'
miRNA:   3'- -CCGC--CGG--------AGUUCUCGGGGGCCA----GCCG- -5'
15977 5' -62.7 NC_004065.1 + 147487 0.7 0.531915
Target:  5'- uGGUGGCCgucc-AGCCCCUGGaCGGg -3'
miRNA:   3'- -CCGCCGGaguucUCGGGGGCCaGCCg -5'
15977 5' -62.7 NC_004065.1 + 128731 0.7 0.531915
Target:  5'- aGGCGGCUggcccCGAGgcAGCCgUCGGcagCGGCa -3'
miRNA:   3'- -CCGCCGGa----GUUC--UCGGgGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 163613 0.7 0.531915
Target:  5'- aGCGGaCCUCGGGuAGCUCCggaucgagCGG-CGGCg -3'
miRNA:   3'- cCGCC-GGAGUUC-UCGGGG--------GCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 67483 0.69 0.538321
Target:  5'- -uCGaGUCUCGAGAGCCcguccgagaccuggCCCGG-CGGCu -3'
miRNA:   3'- ccGC-CGGAGUUCUCGG--------------GGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 109891 0.69 0.541075
Target:  5'- cGCGGCCgcgUCGGGGGgUCCCGGcucguccgccgCGGCc -3'
miRNA:   3'- cCGCCGG---AGUUCUCgGGGGCCa----------GCCG- -5'
15977 5' -62.7 NC_004065.1 + 107748 0.69 0.541075
Target:  5'- -uCGGCCggcGGAuGCCCCaGGUCGGUg -3'
miRNA:   3'- ccGCCGGaguUCU-CGGGGgCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 70294 0.69 0.550287
Target:  5'- cGGCGGCCUUcAGcAGCaCCCCccacaCGGCc -3'
miRNA:   3'- -CCGCCGGAGuUC-UCG-GGGGcca--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 109591 0.69 0.56885
Target:  5'- uGGCGGCguaUCAGGccgcgcucGaCCCCCGGgccgCGGUg -3'
miRNA:   3'- -CCGCCGg--AGUUCu-------C-GGGGGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 169622 0.69 0.56885
Target:  5'- --aGGCC-CuGGAGUCCCUGGUCcGCg -3'
miRNA:   3'- ccgCCGGaGuUCUCGGGGGCCAGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.