miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 191946 0.66 0.737158
Target:  5'- aGCuccaGCCUCAcGGGCCUguuguCCGG-CGGCa -3'
miRNA:   3'- cCGc---CGGAGUuCUCGGG-----GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 203137 0.66 0.737158
Target:  5'- aGCGGCCUCuGGA-CCggCCGG-CGGUg -3'
miRNA:   3'- cCGCCGGAGuUCUcGGg-GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 93898 0.66 0.737158
Target:  5'- -cCGGCUUCccuccccGAGCUCCCGGUCcccGCu -3'
miRNA:   3'- ccGCCGGAGuu-----CUCGGGGGCCAGc--CG- -5'
15977 5' -62.7 NC_004065.1 + 120559 0.66 0.728093
Target:  5'- cGGCGGUCggcgCGAGcgggcgGGaCCUCCGGcgccggucUCGGCc -3'
miRNA:   3'- -CCGCCGGa---GUUC------UC-GGGGGCC--------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 128768 0.66 0.728093
Target:  5'- cGGCaGCgUUGAGGGCgCCgucgCCGG-CGGCa -3'
miRNA:   3'- -CCGcCGgAGUUCUCG-GG----GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 31002 0.66 0.728093
Target:  5'- gGGCGcugaGCCacuguUCGAGcuuGCCCUCGGccgCGGCc -3'
miRNA:   3'- -CCGC----CGG-----AGUUCu--CGGGGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 179751 0.66 0.728093
Target:  5'- cGGCGGUCUCGGG-GCCCgaaUCGGgcgucuUCGaGUg -3'
miRNA:   3'- -CCGCCGGAGUUCuCGGG---GGCC------AGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 105111 0.66 0.728093
Target:  5'- uGGUGGCCgaCGAcGuGCCgCUGGacgCGGCg -3'
miRNA:   3'- -CCGCCGGa-GUU-CuCGGgGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 4381 0.66 0.718958
Target:  5'- cGGCGGCggCGGGAGCCggagugcugUUCGGagCGGUg -3'
miRNA:   3'- -CCGCCGgaGUUCUCGG---------GGGCCa-GCCG- -5'
15977 5' -62.7 NC_004065.1 + 28454 0.66 0.718958
Target:  5'- aGGCaGGCUUCGAaGGCUacucgCUCGaGUCGGCc -3'
miRNA:   3'- -CCG-CCGGAGUUcUCGG-----GGGC-CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 102628 0.66 0.709759
Target:  5'- -aCGGCCUgggagaggCGGGAGUCCUCGaaCGGCg -3'
miRNA:   3'- ccGCCGGA--------GUUCUCGGGGGCcaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 41266 0.66 0.709759
Target:  5'- gGGCGGUCgCGAucG-CCCUGGUgGGCu -3'
miRNA:   3'- -CCGCCGGaGUUcuCgGGGGCCAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 149715 0.66 0.709759
Target:  5'- cGCGGCCgCGccGGCCCUCGGacucauagCGGUc -3'
miRNA:   3'- cCGCCGGaGUucUCGGGGGCCa-------GCCG- -5'
15977 5' -62.7 NC_004065.1 + 4446 0.66 0.709759
Target:  5'- --gGGCCUCGAGcucGUCgCgGGUCGGUc -3'
miRNA:   3'- ccgCCGGAGUUCu--CGGgGgCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 163049 0.67 0.704212
Target:  5'- aGUGGaCCUaCGAGAGCgCCCGcGUuuuggacugcacgaaCGGCg -3'
miRNA:   3'- cCGCC-GGA-GUUCUCGgGGGC-CA---------------GCCG- -5'
15977 5' -62.7 NC_004065.1 + 5548 0.67 0.700504
Target:  5'- aGGCGGa--CAAGguagcuaccAGCUCCCGGUUGaGCu -3'
miRNA:   3'- -CCGCCggaGUUC---------UCGGGGGCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 80623 0.67 0.700504
Target:  5'- cGGCGGUCaUCGAGuuCCCCauGUUGGa -3'
miRNA:   3'- -CCGCCGG-AGUUCucGGGGgcCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 136425 0.67 0.700504
Target:  5'- uGGgGGCC-CGGuGAGCCga-GGUCGGUa -3'
miRNA:   3'- -CCgCCGGaGUU-CUCGGgggCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 176088 0.67 0.700504
Target:  5'- uGCuGCCUCGAGaAGCCgCCGcaagCGGUa -3'
miRNA:   3'- cCGcCGGAGUUC-UCGGgGGCca--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 87164 0.67 0.700504
Target:  5'- cGgGGUCgucCAGGAGCCCCugcaccgcgCGGUCGucGCg -3'
miRNA:   3'- cCgCCGGa--GUUCUCGGGG---------GCCAGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.