miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 124979 0.67 0.6912
Target:  5'- gGGCGGCC---AGAGgCgCgGGUCGuGCa -3'
miRNA:   3'- -CCGCCGGaguUCUCgGgGgCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 78518 0.67 0.6912
Target:  5'- aGCGGCCUCAgaacaccgcugaGGAGCCCguCCGcGUgCcGCu -3'
miRNA:   3'- cCGCCGGAGU------------UCUCGGG--GGC-CA-GcCG- -5'
15977 5' -62.7 NC_004065.1 + 130603 0.67 0.6912
Target:  5'- aGGCGGCgUCugccgcucGGGCCCCUGcugCGaGCg -3'
miRNA:   3'- -CCGCCGgAGuu------CUCGGGGGCca-GC-CG- -5'
15977 5' -62.7 NC_004065.1 + 78858 0.67 0.6912
Target:  5'- gGGCGGCCggcgCGccAGCUCgCGGUCGcCg -3'
miRNA:   3'- -CCGCCGGa---GUucUCGGGgGCCAGCcG- -5'
15977 5' -62.7 NC_004065.1 + 24533 0.67 0.690267
Target:  5'- cGGCGGCagcgaCGAcggcagcggagacGAGCCCCUcGUCGGg -3'
miRNA:   3'- -CCGCCGga---GUU-------------CUCGGGGGcCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 145345 0.67 0.685597
Target:  5'- gGGC-GCCUCAucucGGcuGCCCCCGGUacuauaaaucccagGGCu -3'
miRNA:   3'- -CCGcCGGAGU----UCu-CGGGGGCCAg-------------CCG- -5'
15977 5' -62.7 NC_004065.1 + 121425 0.67 0.684662
Target:  5'- cGGCGGCUUCAGcggaugggcgcucGGGUucgacacuucgacgaCCagguCGGUCGGCg -3'
miRNA:   3'- -CCGCCGGAGUU-------------CUCG---------------GGg---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 118229 0.67 0.681854
Target:  5'- cGGCGGUCaucggagccgUCGacggacgcguGGAGCUCgCCGG-CGGCc -3'
miRNA:   3'- -CCGCCGG----------AGU----------UCUCGGG-GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 169563 0.67 0.679043
Target:  5'- cGCGGCagUCGAGAGCuccgucgacgugguCCUCGGucUCGGUu -3'
miRNA:   3'- cCGCCGg-AGUUCUCG--------------GGGGCC--AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 141416 0.67 0.672473
Target:  5'- uGGCGGCCaUCGccGAGCUCauGGagGGCc -3'
miRNA:   3'- -CCGCCGG-AGUu-CUCGGGggCCagCCG- -5'
15977 5' -62.7 NC_004065.1 + 31094 0.67 0.672473
Target:  5'- gGGCGGCgaUC-AGAaCgCCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGg-AGuUCUcGgGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 169177 0.67 0.663064
Target:  5'- gGGcCGGUCUCGAuguGAGUguucgccgccguCCUCGGUUGGUa -3'
miRNA:   3'- -CC-GCCGGAGUU---CUCG------------GGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 22046 0.67 0.653633
Target:  5'- gGGCaGGCCgc-GGuaucCCUCCGGUCGGUc -3'
miRNA:   3'- -CCG-CCGGaguUCuc--GGGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 47773 0.67 0.653633
Target:  5'- gGGUGGCCgacgAGGAGCCCCucgaucuccuCGGgccagaggagaUCGGUg -3'
miRNA:   3'- -CCGCCGGag--UUCUCGGGG----------GCC-----------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 24263 0.67 0.653633
Target:  5'- uGCGGCaCUCGGuGAGCUCaCGGcucgCGGCc -3'
miRNA:   3'- cCGCCG-GAGUU-CUCGGGgGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 62704 0.67 0.653633
Target:  5'- cGCGGUCUUggGguAGCUCCUGcggcGUCGGUc -3'
miRNA:   3'- cCGCCGGAGuuC--UCGGGGGC----CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 145457 0.67 0.653633
Target:  5'- aGGCgauGGCgUCGGGGGCUgCCGGUCc-- -3'
miRNA:   3'- -CCG---CCGgAGUUCUCGGgGGCCAGccg -5'
15977 5' -62.7 NC_004065.1 + 115144 0.67 0.653633
Target:  5'- -aUGGCCUC-GGAaCCgCCGGcCGGCg -3'
miRNA:   3'- ccGCCGGAGuUCUcGGgGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 180478 0.68 0.644189
Target:  5'- cGUGGCCggCGAuccccuGCCCaagaUGGUCGGCa -3'
miRNA:   3'- cCGCCGGa-GUUcu----CGGGg---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 194166 0.68 0.644189
Target:  5'- aGGCuuCCUCGGGAucCCCCCGGgggUGGUa -3'
miRNA:   3'- -CCGccGGAGUUCUc-GGGGGCCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.