miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 2949 0.7 0.503896
Target:  5'- gGGCucGGCuCUCGAGAGCCaagaccuCCUGGgaaagcgaccucUCGGCg -3'
miRNA:   3'- -CCG--CCG-GAGUUCUCGG-------GGGCC------------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 4381 0.66 0.718958
Target:  5'- cGGCGGCggCGGGAGCCggagugcugUUCGGagCGGUg -3'
miRNA:   3'- -CCGCCGgaGUUCUCGG---------GGGCCa-GCCG- -5'
15977 5' -62.7 NC_004065.1 + 4446 0.66 0.709759
Target:  5'- --gGGCCUCGAGcucGUCgCgGGUCGGUc -3'
miRNA:   3'- ccgCCGGAGUUCu--CGGgGgCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 5548 0.67 0.700504
Target:  5'- aGGCGGa--CAAGguagcuaccAGCUCCCGGUUGaGCu -3'
miRNA:   3'- -CCGCCggaGUUC---------UCGGGGGCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 5707 0.68 0.60639
Target:  5'- uGGCGGgaCUCGGGAuccugGCCCUgGGgaucgugcugaUCGGCa -3'
miRNA:   3'- -CCGCCg-GAGUUCU-----CGGGGgCC-----------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 6749 0.66 0.737158
Target:  5'- cGGCGGCaCUCGGGucGGUCCUCguGGUCcucGCu -3'
miRNA:   3'- -CCGCCG-GAGUUC--UCGGGGG--CCAGc--CG- -5'
15977 5' -62.7 NC_004065.1 + 6913 0.69 0.587565
Target:  5'- cGGCGGCUUCAGcugcGGGCa--CGGccUCGGCg -3'
miRNA:   3'- -CCGCCGGAGUU----CUCGgggGCC--AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 20474 0.72 0.419282
Target:  5'- cGGCcgGGCCUCcuucAGUCCCgCGGUCGGg -3'
miRNA:   3'- -CCG--CCGGAGuuc-UCGGGG-GCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 21955 0.71 0.452471
Target:  5'- uGGCGGCC---AGGGCCgUCG-UCGGCa -3'
miRNA:   3'- -CCGCCGGaguUCUCGGgGGCcAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 22046 0.67 0.653633
Target:  5'- gGGCaGGCCgc-GGuaucCCUCCGGUCGGUc -3'
miRNA:   3'- -CCG-CCGGaguUCuc--GGGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 24263 0.67 0.653633
Target:  5'- uGCGGCaCUCGGuGAGCUCaCGGcucgCGGCc -3'
miRNA:   3'- cCGCCG-GAGUU-CUCGGGgGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 24533 0.67 0.690267
Target:  5'- cGGCGGCagcgaCGAcggcagcggagacGAGCCCCUcGUCGGg -3'
miRNA:   3'- -CCGCCGga---GUU-------------CUCGGGGGcCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 24735 0.66 0.755046
Target:  5'- aGCGGCgagucuggcgcaCUCGuugGGcGGCCCCCcGUUGGCc -3'
miRNA:   3'- cCGCCG------------GAGU---UC-UCGGGGGcCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 24869 0.68 0.604504
Target:  5'- cGGCGGCCUCgacgguggcaaagucGcugaagaugcucucgAGAGCUUCCGGa-GGCg -3'
miRNA:   3'- -CCGCCGGAG---------------U---------------UCUCGGGGGCCagCCG- -5'
15977 5' -62.7 NC_004065.1 + 28454 0.66 0.718958
Target:  5'- aGGCaGGCUUCGAaGGCUacucgCUCGaGUCGGCc -3'
miRNA:   3'- -CCG-CCGGAGUUcUCGG-----GGGC-CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 30100 0.71 0.469594
Target:  5'- aGCGGUagCGAGAGCugcagCCCCGG-CGGCc -3'
miRNA:   3'- cCGCCGgaGUUCUCG-----GGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 31002 0.66 0.728093
Target:  5'- gGGCGcugaGCCacuguUCGAGcuuGCCCUCGGccgCGGCc -3'
miRNA:   3'- -CCGC----CGG-----AGUUCu--CGGGGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 31089 0.66 0.755046
Target:  5'- cGGCGGCCUU---GGCCgCCagGGUgGaGCg -3'
miRNA:   3'- -CCGCCGGAGuucUCGG-GGg-CCAgC-CG- -5'
15977 5' -62.7 NC_004065.1 + 31094 0.67 0.672473
Target:  5'- gGGCGGCgaUC-AGAaCgCCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGg-AGuUCUcGgGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 36109 0.7 0.513768
Target:  5'- uGGCGGCaaCGGGGccGCUgCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGgaGUUCU--CGGgGGCCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.