miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 37301 1.13 0.000681
Target:  5'- cGGCGGCCUCAAGAGCCCCCGGUCGGCa -3'
miRNA:   3'- -CCGCCGGAGUUCUCGGGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 40151 0.74 0.289789
Target:  5'- cGGCGGCCUCGuu-GUccaccauuaUCCCGGUCGGa -3'
miRNA:   3'- -CCGCCGGAGUucuCG---------GGGGCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 41266 0.66 0.709759
Target:  5'- gGGCGGUCgCGAucG-CCCUGGUgGGCu -3'
miRNA:   3'- -CCGCCGGaGUUcuCgGGGGCCAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 46511 0.66 0.755046
Target:  5'- cGCGaGCCguUCGAGA-CCCUguCGGUCGuGCa -3'
miRNA:   3'- cCGC-CGG--AGUUCUcGGGG--GCCAGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 47773 0.67 0.653633
Target:  5'- gGGUGGCCgacgAGGAGCCCCucgaucuccuCGGgccagaggagaUCGGUg -3'
miRNA:   3'- -CCGCCGGag--UUCUCGGGG----------GCC-----------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 59572 0.74 0.309005
Target:  5'- cGGCGGCagcgaAGGcGCCUCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGgag--UUCuCGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 59939 0.68 0.60639
Target:  5'- cGCGGCCagAAGcccggagugguGCCCgCCaGGUUGGCg -3'
miRNA:   3'- cCGCCGGagUUCu----------CGGG-GG-CCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 62704 0.67 0.653633
Target:  5'- cGCGGUCUUggGguAGCUCCUGcggcGUCGGUc -3'
miRNA:   3'- cCGCCGGAGuuC--UCGGGGGC----CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 63057 0.74 0.309005
Target:  5'- gGGCGGCgCagucgCAGGAGUCgCCGGUcgcCGGCg -3'
miRNA:   3'- -CCGCCG-Ga----GUUCUCGGgGGCCA---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 65440 0.73 0.37238
Target:  5'- cGGCGGCCgugguggcUCuGGAGCgCgaagCGGUCGGCg -3'
miRNA:   3'- -CCGCCGG--------AGuUCUCGgGg---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 67483 0.69 0.538321
Target:  5'- -uCGaGUCUCGAGAGCCcguccgagaccuggCCCGG-CGGCu -3'
miRNA:   3'- ccGC-CGGAGUUCUCGG--------------GGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 70294 0.69 0.550287
Target:  5'- cGGCGGCCUUcAGcAGCaCCCCccacaCGGCc -3'
miRNA:   3'- -CCGCCGGAGuUC-UCG-GGGGcca--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 72905 0.66 0.755046
Target:  5'- cGCGaugauGCCcccgcUgAAGGcGCCCCCGG-CGGCg -3'
miRNA:   3'- cCGC-----CGG-----AgUUCU-CGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 76759 0.68 0.622445
Target:  5'- cGGCGGCCUCGucaucguccggcgcAucGCCgCCGcGaCGGCg -3'
miRNA:   3'- -CCGCCGGAGU--------------UcuCGGgGGC-CaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 77013 0.66 0.763855
Target:  5'- aGGCGGCgugcugcgacCUCGacucGGAGCUggCgCGGaUCGGCg -3'
miRNA:   3'- -CCGCCG----------GAGU----UCUCGG--GgGCC-AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 78294 0.72 0.379946
Target:  5'- aGCGGCuCUCGAGGGCCUcggaCUGcGUgGGCg -3'
miRNA:   3'- cCGCCG-GAGUUCUCGGG----GGC-CAgCCG- -5'
15977 5' -62.7 NC_004065.1 + 78518 0.67 0.6912
Target:  5'- aGCGGCCUCAgaacaccgcugaGGAGCCCguCCGcGUgCcGCu -3'
miRNA:   3'- cCGCCGGAGU------------UCUCGGG--GGC-CA-GcCG- -5'
15977 5' -62.7 NC_004065.1 + 78858 0.67 0.6912
Target:  5'- gGGCGGCCggcgCGccAGCUCgCGGUCGcCg -3'
miRNA:   3'- -CCGCCGGa---GUucUCGGGgGCCAGCcG- -5'
15977 5' -62.7 NC_004065.1 + 80623 0.67 0.700504
Target:  5'- cGGCGGUCaUCGAGuuCCCCauGUUGGa -3'
miRNA:   3'- -CCGCCGG-AGUUCucGGGGgcCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 82767 0.69 0.587565
Target:  5'- -aCGGCCUCgGAGAGCaggcgUCCGGU-GGCg -3'
miRNA:   3'- ccGCCGGAG-UUCUCGg----GGGCCAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.