miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 229595 0.74 0.315622
Target:  5'- gGGCGGCUcCAGGGGguucacCCCCCGGgcgCGGa -3'
miRNA:   3'- -CCGCCGGaGUUCUC------GGGGGCCa--GCCg -5'
15977 5' -62.7 NC_004065.1 + 229442 0.7 0.517378
Target:  5'- cGGCGGCgCUCGAGgaacgcucgcuucacGGCuCUCCGGgccgGGCg -3'
miRNA:   3'- -CCGCCG-GAGUUC---------------UCG-GGGGCCag--CCG- -5'
15977 5' -62.7 NC_004065.1 + 227075 0.68 0.60639
Target:  5'- aGGUcuuGGCuCUCGAGAGCCgagCCCGGUgccaGGa -3'
miRNA:   3'- -CCG---CCG-GAGUUCUCGG---GGGCCAg---CCg -5'
15977 5' -62.7 NC_004065.1 + 224037 0.66 0.763855
Target:  5'- cGuaGGCC-CGAGGGCCaugaCGGcCGGUg -3'
miRNA:   3'- -CcgCCGGaGUUCUCGGgg--GCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 203137 0.66 0.737158
Target:  5'- aGCGGCCUCuGGA-CCggCCGG-CGGUg -3'
miRNA:   3'- cCGCCGGAGuUCUcGGg-GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 203096 0.7 0.478278
Target:  5'- aGCGGUCUCuuGAGCCUucuUCGGggucCGGCg -3'
miRNA:   3'- cCGCCGGAGuuCUCGGG---GGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 202339 0.68 0.62528
Target:  5'- gGGCGGa-UCA-GAGCCUCCGGccuccaGGCc -3'
miRNA:   3'- -CCGCCggAGUuCUCGGGGGCCag----CCG- -5'
15977 5' -62.7 NC_004065.1 + 201415 0.69 0.587565
Target:  5'- cGCGGCgggUCGGGAguggaaccacaGCUCCUGGUCGGg -3'
miRNA:   3'- cCGCCGg--AGUUCU-----------CGGGGGCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 196635 0.72 0.411218
Target:  5'- gGGCGagcGCCUCGAGAGgCUCCGcGcgcagaagaUCGGCa -3'
miRNA:   3'- -CCGC---CGGAGUUCUCgGGGGC-C---------AGCCG- -5'
15977 5' -62.7 NC_004065.1 + 195363 0.66 0.746145
Target:  5'- aGGUGGCCaacacgauagCGGGAuuCCUCCGGgacCGGCu -3'
miRNA:   3'- -CCGCCGGa---------GUUCUc-GGGGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 194166 0.68 0.644189
Target:  5'- aGGCuuCCUCGGGAucCCCCCGGgggUGGUa -3'
miRNA:   3'- -CCGccGGAGUUCUc-GGGGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 192813 0.66 0.743457
Target:  5'- cGGCGGCgUCugggcgcugcgcuuGAGGcagccGCUCUCGGUgaCGGCg -3'
miRNA:   3'- -CCGCCGgAG--------------UUCU-----CGGGGGCCA--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 191946 0.66 0.737158
Target:  5'- aGCuccaGCCUCAcGGGCCUguuguCCGG-CGGCa -3'
miRNA:   3'- cCGc---CGGAGUuCUCGGG-----GGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 184918 0.66 0.763855
Target:  5'- gGGUGG-CUCGGGAGCggCCGGgagaCGGUc -3'
miRNA:   3'- -CCGCCgGAGUUCUCGggGGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 182719 0.7 0.49588
Target:  5'- cGGauCGGCCUCAcgggcgacgccGGGGCCaCCGacacGUCGGCg -3'
miRNA:   3'- -CC--GCCGGAGU-----------UCUCGGgGGC----CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 180478 0.68 0.644189
Target:  5'- cGUGGCCggCGAuccccuGCCCaagaUGGUCGGCa -3'
miRNA:   3'- cCGCCGGa-GUUcu----CGGGg---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 179751 0.66 0.728093
Target:  5'- cGGCGGUCUCGGG-GCCCgaaUCGGgcgucuUCGaGUg -3'
miRNA:   3'- -CCGCCGGAGUUCuCGGG---GGCC------AGC-CG- -5'
15977 5' -62.7 NC_004065.1 + 176088 0.67 0.700504
Target:  5'- uGCuGCCUCGAGaAGCCgCCGcaagCGGUa -3'
miRNA:   3'- cCGcCGGAGUUC-UCGGgGGCca--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 169622 0.69 0.56885
Target:  5'- --aGGCC-CuGGAGUCCCUGGUCcGCg -3'
miRNA:   3'- ccgCCGGaGuUCUCGGGGGCCAGcCG- -5'
15977 5' -62.7 NC_004065.1 + 169563 0.67 0.679043
Target:  5'- cGCGGCagUCGAGAGCuccgucgacgugguCCUCGGucUCGGUu -3'
miRNA:   3'- cCGCCGg-AGUUCUCG--------------GGGGCC--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.