miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15977 5' -62.7 NC_004065.1 + 115065 0.69 0.578191
Target:  5'- cGGCGcGCg-CGAGGacgcGgCCUCGGUCGGCu -3'
miRNA:   3'- -CCGC-CGgaGUUCU----CgGGGGCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 147487 0.7 0.531915
Target:  5'- uGGUGGCCgucc-AGCCCCUGGaCGGg -3'
miRNA:   3'- -CCGCCGGaguucUCGGGGGCCaGCCg -5'
15977 5' -62.7 NC_004065.1 + 120519 0.7 0.531915
Target:  5'- uGGCGccGCUcgacgaugUCGAGGGUCUCCGGUgugcCGGCg -3'
miRNA:   3'- -CCGC--CGG--------AGUUCUCGGGGGCCA----GCCG- -5'
15977 5' -62.7 NC_004065.1 + 128731 0.7 0.531915
Target:  5'- aGGCGGCUggcccCGAGgcAGCCgUCGGcagCGGCa -3'
miRNA:   3'- -CCGCCGGa----GUUC--UCGGgGGCCa--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 163613 0.7 0.531915
Target:  5'- aGCGGaCCUCGGGuAGCUCCggaucgagCGG-CGGCg -3'
miRNA:   3'- cCGCC-GGAGUUC-UCGGGG--------GCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 109891 0.69 0.541075
Target:  5'- cGCGGCCgcgUCGGGGGgUCCCGGcucguccgccgCGGCc -3'
miRNA:   3'- cCGCCGG---AGUUCUCgGGGGCCa----------GCCG- -5'
15977 5' -62.7 NC_004065.1 + 70294 0.69 0.550287
Target:  5'- cGGCGGCCUUcAGcAGCaCCCCccacaCGGCc -3'
miRNA:   3'- -CCGCCGGAGuUC-UCG-GGGGcca--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 109591 0.69 0.56885
Target:  5'- uGGCGGCguaUCAGGccgcgcucGaCCCCCGGgccgCGGUg -3'
miRNA:   3'- -CCGCCGg--AGUUCu-------C-GGGGGCCa---GCCG- -5'
15977 5' -62.7 NC_004065.1 + 103274 0.69 0.575385
Target:  5'- -cCGGCCUCGAacuucagguucuucGAGgCCCgCGG-CGGCa -3'
miRNA:   3'- ccGCCGGAGUU--------------CUCgGGG-GCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 36109 0.7 0.513768
Target:  5'- uGGCGGCaaCGGGGccGCUgCCGG-CGGCg -3'
miRNA:   3'- -CCGCCGgaGUUCU--CGGgGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 93996 0.7 0.513768
Target:  5'- uGGcCGGCUUUucGGGgUCCCGGUucCGGCu -3'
miRNA:   3'- -CC-GCCGGAGuuCUCgGGGGCCA--GCCG- -5'
15977 5' -62.7 NC_004065.1 + 30100 0.71 0.469594
Target:  5'- aGCGGUagCGAGAGCugcagCCCCGG-CGGCc -3'
miRNA:   3'- cCGCCGgaGUUCUCG-----GGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 127330 0.76 0.248623
Target:  5'- uGCGcGCgUCAAGAGCgCUCCGGUCuGCg -3'
miRNA:   3'- cCGC-CGgAGUUCUCG-GGGGCCAGcCG- -5'
15977 5' -62.7 NC_004065.1 + 40151 0.74 0.289789
Target:  5'- cGGCGGCCUCGuu-GUccaccauuaUCCCGGUCGGa -3'
miRNA:   3'- -CCGCCGGAGUucuCG---------GGGGCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 229595 0.74 0.315622
Target:  5'- gGGCGGCUcCAGGGGguucacCCCCCGGgcgCGGa -3'
miRNA:   3'- -CCGCCGGaGUUCUC------GGGGGCCa--GCCg -5'
15977 5' -62.7 NC_004065.1 + 20474 0.72 0.419282
Target:  5'- cGGCcgGGCCUCcuucAGUCCCgCGGUCGGg -3'
miRNA:   3'- -CCG--CCGGAGuuc-UCGGGG-GCCAGCCg -5'
15977 5' -62.7 NC_004065.1 + 118175 0.71 0.427442
Target:  5'- cGGCGGCCgUCAcGGcuGCCgCCguuCGGUUGGCg -3'
miRNA:   3'- -CCGCCGG-AGUuCU--CGG-GG---GCCAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 100610 0.71 0.435694
Target:  5'- aGGCGcacaGCUUCAGcAGCCCCaucaGcGUCGGCg -3'
miRNA:   3'- -CCGC----CGGAGUUcUCGGGGg---C-CAGCCG- -5'
15977 5' -62.7 NC_004065.1 + 132819 0.71 0.435694
Target:  5'- cGGCguagGGCUUCuuGAuGCUCCCGGgCGGCg -3'
miRNA:   3'- -CCG----CCGGAGuuCU-CGGGGGCCaGCCG- -5'
15977 5' -62.7 NC_004065.1 + 21955 0.71 0.452471
Target:  5'- uGGCGGCC---AGGGCCgUCG-UCGGCa -3'
miRNA:   3'- -CCGCCGGaguUCUCGGgGGCcAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.