Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15977 | 5' | -62.7 | NC_004065.1 | + | 139896 | 0.82 | 0.092555 |
Target: 5'- aGGUGGCCgc-GGGGCCUCCGGcCGGCg -3' miRNA: 3'- -CCGCCGGaguUCUCGGGGGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 143276 | 0.7 | 0.522811 |
Target: 5'- gGGCGGCagcuUCAAGGGCCga-GG-CGGCg -3' miRNA: 3'- -CCGCCGg---AGUUCUCGGgggCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 107748 | 0.69 | 0.541075 |
Target: 5'- -uCGGCCggcGGAuGCCCCaGGUCGGUg -3' miRNA: 3'- ccGCCGGaguUCU-CGGGGgCCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 137536 | 0.66 | 0.763855 |
Target: 5'- aGGCGGgaCUUCcGGucAGCCUCUGGccCGGCa -3' miRNA: 3'- -CCGCC--GGAGuUC--UCGGGGGCCa-GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 121601 | 0.73 | 0.357559 |
Target: 5'- -aCGGCC-CGGGAcCCCCCGGUagGGCa -3' miRNA: 3'- ccGCCGGaGUUCUcGGGGGCCAg-CCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 65440 | 0.73 | 0.37238 |
Target: 5'- cGGCGGCCgugguggcUCuGGAGCgCgaagCGGUCGGCg -3' miRNA: 3'- -CCGCCGG--------AGuUCUCGgGg---GCCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 196635 | 0.72 | 0.411218 |
Target: 5'- gGGCGagcGCCUCGAGAGgCUCCGcGcgcagaagaUCGGCa -3' miRNA: 3'- -CCGC---CGGAGUUCUCgGGGGC-C---------AGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 105480 | 0.71 | 0.435694 |
Target: 5'- aGGCGGCCg-AGGAGCUguuccaCCUGGU-GGCg -3' miRNA: 3'- -CCGCCGGagUUCUCGG------GGGCCAgCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 203096 | 0.7 | 0.478278 |
Target: 5'- aGCGGUCUCuuGAGCCUucuUCGGggucCGGCg -3' miRNA: 3'- cCGCCGGAGuuCUCGGG---GGCCa---GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 229442 | 0.7 | 0.517378 |
Target: 5'- cGGCGGCgCUCGAGgaacgcucgcuucacGGCuCUCCGGgccgGGCg -3' miRNA: 3'- -CCGCCG-GAGUUC---------------UCG-GGGGCCag--CCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 89173 | 0.7 | 0.487041 |
Target: 5'- cGGCGGCCUUcAGGGCCgUCuucuuGUCGGa -3' miRNA: 3'- -CCGCCGGAGuUCUCGGgGGc----CAGCCg -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 146842 | 0.7 | 0.478278 |
Target: 5'- aGCgGGCCgcCGGGAGCgCCUGGUCuGCa -3' miRNA: 3'- cCG-CCGGa-GUUCUCGgGGGCCAGcCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 150025 | 0.76 | 0.22227 |
Target: 5'- uGGCGGCUcggaAGGAggaacuGCCCgCGGUCGGCg -3' miRNA: 3'- -CCGCCGGag--UUCU------CGGGgGCCAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 182719 | 0.7 | 0.49588 |
Target: 5'- cGGauCGGCCUCAcgggcgacgccGGGGCCaCCGacacGUCGGCg -3' miRNA: 3'- -CC--GCCGGAGU-----------UCUCGGgGGC----CAGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 63057 | 0.74 | 0.309005 |
Target: 5'- gGGCGGCgCagucgCAGGAGUCgCCGGUcgcCGGCg -3' miRNA: 3'- -CCGCCG-Ga----GUUCUCGGgGGCCA---GCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 141041 | 0.7 | 0.478278 |
Target: 5'- uGGaCGGCgUCAAGGcGCCCCaGGU-GGCc -3' miRNA: 3'- -CC-GCCGgAGUUCU-CGGGGgCCAgCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 2949 | 0.7 | 0.503896 |
Target: 5'- gGGCucGGCuCUCGAGAGCCaagaccuCCUGGgaaagcgaccucUCGGCg -3' miRNA: 3'- -CCG--CCG-GAGUUCUCGG-------GGGCC------------AGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 67483 | 0.69 | 0.538321 |
Target: 5'- -uCGaGUCUCGAGAGCCcguccgagaccuggCCCGG-CGGCu -3' miRNA: 3'- ccGC-CGGAGUUCUCGG--------------GGGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 59572 | 0.74 | 0.309005 |
Target: 5'- cGGCGGCagcgaAGGcGCCUCCGG-CGGCg -3' miRNA: 3'- -CCGCCGgag--UUCuCGGGGGCCaGCCG- -5' |
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15977 | 5' | -62.7 | NC_004065.1 | + | 78294 | 0.72 | 0.379946 |
Target: 5'- aGCGGCuCUCGAGGGCCUcggaCUGcGUgGGCg -3' miRNA: 3'- cCGCCG-GAGUUCUCGGG----GGC-CAgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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