miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15978 5' -51.8 NC_004065.1 + 7741 0.66 0.997881
Target:  5'- cGUCGUGUACAUCuACcUGGUCucgGACGUc -3'
miRNA:   3'- -UAGCGCAUGUGGuUGaGCUAG---CUGCG- -5'
15978 5' -51.8 NC_004065.1 + 185518 0.66 0.997881
Target:  5'- cAUCGCGc-CGCCgGACgaagaCGAUUGACGUu -3'
miRNA:   3'- -UAGCGCauGUGG-UUGa----GCUAGCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 191621 0.66 0.997881
Target:  5'- cUCGaCGUugAUACCGGcCUCGAaaUCGcCGCa -3'
miRNA:   3'- uAGC-GCA--UGUGGUU-GAGCU--AGCuGCG- -5'
15978 5' -51.8 NC_004065.1 + 128492 0.66 0.997881
Target:  5'- -gCGCGUuaucuGCGCCGGCauaGAcgcCGACGCu -3'
miRNA:   3'- uaGCGCA-----UGUGGUUGag-CUa--GCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 190609 0.66 0.997881
Target:  5'- cAUgGCGUcccgGCcccgACCAACUUGcgugCGACGCa -3'
miRNA:   3'- -UAgCGCA----UG----UGGUUGAGCua--GCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 113771 0.66 0.997881
Target:  5'- -gCGCGgcggcagACgACCGACUCGggCGGCu- -3'
miRNA:   3'- uaGCGCa------UG-UGGUUGAGCuaGCUGcg -5'
15978 5' -51.8 NC_004065.1 + 149751 0.66 0.997881
Target:  5'- -gCGCGU-CGCgCAGCUCGcgCGucuUGCu -3'
miRNA:   3'- uaGCGCAuGUG-GUUGAGCuaGCu--GCG- -5'
15978 5' -51.8 NC_004065.1 + 196472 0.66 0.997881
Target:  5'- cUCGCGcUGCAuguCCAGCguguaGAUCG-CGCc -3'
miRNA:   3'- uAGCGC-AUGU---GGUUGag---CUAGCuGCG- -5'
15978 5' -51.8 NC_004065.1 + 8519 0.66 0.997881
Target:  5'- uGUCGgGUgGCuuucgACCGGCUCGAacgguggaucgCGGCGCg -3'
miRNA:   3'- -UAGCgCA-UG-----UGGUUGAGCUa----------GCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 200323 0.66 0.997881
Target:  5'- --gGCGUcCGCC-GCUCGAcCGGCGa -3'
miRNA:   3'- uagCGCAuGUGGuUGAGCUaGCUGCg -5'
15978 5' -51.8 NC_004065.1 + 100072 0.66 0.997654
Target:  5'- cUCGCGUgaGCGCCucuuugguccugUCGAUgGACGUg -3'
miRNA:   3'- uAGCGCA--UGUGGuug---------AGCUAgCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 194640 0.66 0.997654
Target:  5'- uGUUGCGcUGCGCCAgggcgugcaauggcaGCUCcuUCGACGa -3'
miRNA:   3'- -UAGCGC-AUGUGGU---------------UGAGcuAGCUGCg -5'
15978 5' -51.8 NC_004065.1 + 92145 0.66 0.997534
Target:  5'- -gCGCGcugaagaucaccccgACGCUgucGGCggCGAUCGACGCg -3'
miRNA:   3'- uaGCGCa--------------UGUGG---UUGa-GCUAGCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 157558 0.66 0.997492
Target:  5'- -cCGCGccgACACCGuCUCGcUCGuCGUa -3'
miRNA:   3'- uaGCGCa--UGUGGUuGAGCuAGCuGCG- -5'
15978 5' -51.8 NC_004065.1 + 85202 0.66 0.997492
Target:  5'- -cCGCG-ACAUCAacuucaugggcgACUCGG-CGACGUg -3'
miRNA:   3'- uaGCGCaUGUGGU------------UGAGCUaGCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 188828 0.66 0.997492
Target:  5'- uGUCGCG-GCACCGACcuuuccaGGgaGACGCa -3'
miRNA:   3'- -UAGCGCaUGUGGUUGag-----CUagCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 91500 0.66 0.997492
Target:  5'- -cCGCGUucgaGCGCCAACagccCG-UCGaACGCg -3'
miRNA:   3'- uaGCGCA----UGUGGUUGa---GCuAGC-UGCG- -5'
15978 5' -51.8 NC_004065.1 + 67480 0.66 0.997492
Target:  5'- -aCGUGUGCgacgacuucACCGAggCGAucUCGGCGCu -3'
miRNA:   3'- uaGCGCAUG---------UGGUUgaGCU--AGCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 200782 0.66 0.997451
Target:  5'- cGUCGCGcgGCGgUGGCgggCGAcggcgucUCGGCGCg -3'
miRNA:   3'- -UAGCGCa-UGUgGUUGa--GCU-------AGCUGCG- -5'
15978 5' -51.8 NC_004065.1 + 69127 0.66 0.997365
Target:  5'- -gCGCGgcGCGCCGACaaGGugcuggggaagcugUCGACGCu -3'
miRNA:   3'- uaGCGCa-UGUGGUUGagCU--------------AGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.