miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 3' -59.5 NC_001347.2 + 127247 0.66 0.903558
Target:  5'- uCCGUCACguacccgacaGCCGuUUCUCgGAcGAGGCc- -3'
miRNA:   3'- -GGCAGUG----------CGGC-AGGAGgCU-CUCCGcg -5'
1598 3' -59.5 NC_001347.2 + 89296 0.66 0.903558
Target:  5'- aCGUgaugagaccCGCGUCGUUCagCGAGAGaGCGUc -3'
miRNA:   3'- gGCA---------GUGCGGCAGGagGCUCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 94319 0.66 0.902973
Target:  5'- gCCGccCACGgCGUCCUCgGcgucgucGGAGGCcgguGCg -3'
miRNA:   3'- -GGCa-GUGCgGCAGGAGgC-------UCUCCG----CG- -5'
1598 3' -59.5 NC_001347.2 + 199622 0.66 0.897609
Target:  5'- gCCGcCgGCGCCGUUCUCgGGcagcGAGG-GCa -3'
miRNA:   3'- -GGCaG-UGCGGCAGGAGgCU----CUCCgCG- -5'
1598 3' -59.5 NC_001347.2 + 149138 0.66 0.897609
Target:  5'- uCUGUCACGCCGgccaccaagaCCUCCaucuauGGGuacGGGaCGCg -3'
miRNA:   3'- -GGCAGUGCGGCa---------GGAGG------CUC---UCC-GCG- -5'
1598 3' -59.5 NC_001347.2 + 29075 0.66 0.893943
Target:  5'- gCCGUUAcCGCCucuGUCCgauguuucggaguaCCGAguagaguauuccGAGGCGCg -3'
miRNA:   3'- -GGCAGU-GCGG---CAGGa-------------GGCU------------CUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 39795 0.66 0.891459
Target:  5'- gCG-CACaGCCG-CCUCCc--GGGCGCg -3'
miRNA:   3'- gGCaGUG-CGGCaGGAGGcucUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 83873 0.66 0.891459
Target:  5'- gUGUCGCGCCGUCCgcuacuUUCGcGGAcGCGg -3'
miRNA:   3'- gGCAGUGCGGCAGG------AGGC-UCUcCGCg -5'
1598 3' -59.5 NC_001347.2 + 113465 0.66 0.891459
Target:  5'- cCCGUCACgGUCGgCCgCCGuGAGGUc- -3'
miRNA:   3'- -GGCAGUG-CGGCaGGaGGCuCUCCGcg -5'
1598 3' -59.5 NC_001347.2 + 67932 0.66 0.885111
Target:  5'- gCCGggacUCAcCGUCGUUCUCggaggaGGGAGGCGg -3'
miRNA:   3'- -GGC----AGU-GCGGCAGGAGg-----CUCUCCGCg -5'
1598 3' -59.5 NC_001347.2 + 13703 0.66 0.885111
Target:  5'- aCCGUCAUcgGCaCGUgCucuuuuuugaaaUCCGAGAGGUaGCc -3'
miRNA:   3'- -GGCAGUG--CG-GCAgG------------AGGCUCUCCG-CG- -5'
1598 3' -59.5 NC_001347.2 + 175057 0.66 0.884465
Target:  5'- gCG--GCGCCGUCUUcggcgugcaucCCGAGAcgcggcaGGCGCa -3'
miRNA:   3'- gGCagUGCGGCAGGA-----------GGCUCU-------CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 81480 0.66 0.878568
Target:  5'- -aGUgGCGUCGUCgCUCgGcGGGuGCGCa -3'
miRNA:   3'- ggCAgUGCGGCAG-GAGgCuCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 66667 0.66 0.878568
Target:  5'- uCCGUCGCGa---UCUCCGAGAGGa-- -3'
miRNA:   3'- -GGCAGUGCggcaGGAGGCUCUCCgcg -5'
1598 3' -59.5 NC_001347.2 + 38674 0.67 0.864915
Target:  5'- aCCGUCGUGCCGgCCcaCCGcc-GGCGCa -3'
miRNA:   3'- -GGCAGUGCGGCaGGa-GGCucuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 116174 0.67 0.864915
Target:  5'- gCCGaaCAUGCCGaugaguagaUCCGAGGcGGCGCg -3'
miRNA:   3'- -GGCa-GUGCGGCagg------AGGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 177166 0.67 0.864915
Target:  5'- aCCGUCAgGUg---CUCCGAGAcGCGCg -3'
miRNA:   3'- -GGCAGUgCGgcagGAGGCUCUcCGCG- -5'
1598 3' -59.5 NC_001347.2 + 38009 0.67 0.864915
Target:  5'- gCCGcCGCGCgG-CCUCggCGGcGGGCGCc -3'
miRNA:   3'- -GGCaGUGCGgCaGGAG--GCUcUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 183291 0.67 0.864915
Target:  5'- gUCGUUuaGCG-CGUCCUCC-AGGGuGCGUg -3'
miRNA:   3'- -GGCAG--UGCgGCAGGAGGcUCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 179966 0.67 0.857813
Target:  5'- uCCGUCAuguggagaaacCGCCGuucggcucUCCUCCGAGccaaaagucGCGCc -3'
miRNA:   3'- -GGCAGU-----------GCGGC--------AGGAGGCUCuc-------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.