Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1598 | 3' | -59.5 | NC_001347.2 | + | 127187 | 0.67 | 0.850534 |
Target: 5'- aCGUCuucuGCGCCGUggCCUCCGAaaccuGGCa- -3' miRNA: 3'- gGCAG----UGCGGCA--GGAGGCUcu---CCGcg -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 179966 | 0.67 | 0.857813 |
Target: 5'- uCCGUCAuguggagaaacCGCCGuucggcucUCCUCCGAGccaaaagucGCGCc -3' miRNA: 3'- -GGCAGU-----------GCGGC--------AGGAGGCUCuc-------CGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 38674 | 0.67 | 0.864915 |
Target: 5'- aCCGUCGUGCCGgCCcaCCGcc-GGCGCa -3' miRNA: 3'- -GGCAGUGCGGCaGGa-GGCucuCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 116174 | 0.67 | 0.864915 |
Target: 5'- gCCGaaCAUGCCGaugaguagaUCCGAGGcGGCGCg -3' miRNA: 3'- -GGCa-GUGCGGCagg------AGGCUCU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 177166 | 0.67 | 0.864915 |
Target: 5'- aCCGUCAgGUg---CUCCGAGAcGCGCg -3' miRNA: 3'- -GGCAGUgCGgcagGAGGCUCUcCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 38009 | 0.67 | 0.864915 |
Target: 5'- gCCGcCGCGCgG-CCUCggCGGcGGGCGCc -3' miRNA: 3'- -GGCaGUGCGgCaGGAG--GCUcUCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 183291 | 0.67 | 0.864915 |
Target: 5'- gUCGUUuaGCG-CGUCCUCC-AGGGuGCGUg -3' miRNA: 3'- -GGCAG--UGCgGCAGGAGGcUCUC-CGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 151552 | 0.67 | 0.857813 |
Target: 5'- gCGUCACGCgugaCGUCCUCuCGcugcucuuuGAGGauCGCg -3' miRNA: 3'- gGCAGUGCG----GCAGGAG-GCu--------CUCC--GCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 116679 | 0.68 | 0.775399 |
Target: 5'- gCCGUCgccaccuccgGCGCUGUCCUCgCGAcguGAGggaucccagccgcuGCGCa -3' miRNA: 3'- -GGCAG----------UGCGGCAGGAG-GCU---CUC--------------CGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 156835 | 0.68 | 0.778003 |
Target: 5'- uCCG-CGCGUCGgCCUCUG-GAGGaGCa -3' miRNA: 3'- -GGCaGUGCGGCaGGAGGCuCUCCgCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 168551 | 0.68 | 0.778003 |
Target: 5'- gUCG-CGCGCCGUCUguaCCGu--GGCGUg -3' miRNA: 3'- -GGCaGUGCGGCAGGa--GGCucuCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 222842 | 0.68 | 0.803451 |
Target: 5'- aCGU--CGCCGgCCUCCaggagGAGAuGGCGCu -3' miRNA: 3'- gGCAguGCGGCaGGAGG-----CUCU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 228481 | 0.68 | 0.778003 |
Target: 5'- aCUGUaCACggcgGCCGUggCCUCCGAGuaaaaaaaccAGGUGCu -3' miRNA: 3'- -GGCA-GUG----CGGCA--GGAGGCUC----------UCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 100883 | 0.68 | 0.803451 |
Target: 5'- gCGgcgcaGCGCCGgccaUUCUCCGGGucGCGCu -3' miRNA: 3'- gGCag---UGCGGC----AGGAGGCUCucCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 193897 | 0.68 | 0.803451 |
Target: 5'- cCCGUCAUGCCG-CUgggcgaaaUUGAG-GGCGCc -3' miRNA: 3'- -GGCAGUGCGGCaGGa-------GGCUCuCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 24499 | 0.68 | 0.811673 |
Target: 5'- uUGUCACGuuGUCUgggcgCCc-GAGGUGCu -3' miRNA: 3'- gGCAGUGCggCAGGa----GGcuCUCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 8608 | 0.69 | 0.751535 |
Target: 5'- cCCGUCACGCaggcgcuggCGUUC-CCGuAGcGGGUGCg -3' miRNA: 3'- -GGCAGUGCG---------GCAGGaGGC-UC-UCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 91165 | 0.69 | 0.760459 |
Target: 5'- aCGUUuCGcCCGUgCUCCGAGGagcaGCGCg -3' miRNA: 3'- gGCAGuGC-GGCAgGAGGCUCUc---CGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 152637 | 0.69 | 0.751535 |
Target: 5'- -aGUCACGUCGaUCUUgacgcugcuggCCGAGAcGGCGUg -3' miRNA: 3'- ggCAGUGCGGC-AGGA-----------GGCUCU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 42333 | 0.69 | 0.74252 |
Target: 5'- -aGUCACGCguaCG-CCUCUGGuGuGGCGCg -3' miRNA: 3'- ggCAGUGCG---GCaGGAGGCU-CuCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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