miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 3' -59.5 NC_001347.2 + 166619 1.14 0.001406
Target:  5'- aCCGUCACGCCGUCCUCCGAGAGGCGCg -3'
miRNA:   3'- -GGCAGUGCGGCAGGAGGCUCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 196960 0.76 0.381797
Target:  5'- gCUGUCgcGCGCCG-CCgacgcCCGAGAcGGCGCg -3'
miRNA:   3'- -GGCAG--UGCGGCaGGa----GGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 180228 0.74 0.44667
Target:  5'- gCCGcCGCGCCGUaguUCUCCGA-AGGCGg -3'
miRNA:   3'- -GGCaGUGCGGCA---GGAGGCUcUCCGCg -5'
1598 3' -59.5 NC_001347.2 + 193147 0.73 0.499134
Target:  5'- gCCGUCGCGCCuUCCUCCucugccuGGGcacGCGCg -3'
miRNA:   3'- -GGCAGUGCGGcAGGAGGcu-----CUC---CGCG- -5'
1598 3' -59.5 NC_001347.2 + 197145 0.73 0.535586
Target:  5'- gCCGUCGuCGCCG-CC-CCGGGGcccucGGUGCg -3'
miRNA:   3'- -GGCAGU-GCGGCaGGaGGCUCU-----CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 182631 0.73 0.535586
Target:  5'- gUGUagGC-CCGUCUgCCGAGAGGCGCc -3'
miRNA:   3'- gGCAg-UGcGGCAGGaGGCUCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 38705 0.73 0.544849
Target:  5'- cCCGUCcgaGCGCCGUcgCCUCCuc--GGCGCg -3'
miRNA:   3'- -GGCAG---UGCGGCA--GGAGGcucuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 88222 0.73 0.545778
Target:  5'- gCCGcUCACGCUGUCCgaggggucgcugccgCCGgugaAGAGaGCGCg -3'
miRNA:   3'- -GGC-AGUGCGGCAGGa--------------GGC----UCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 156912 0.72 0.582364
Target:  5'- gCCGUgCGCGCCGUCCUUgGAGcGGa-- -3'
miRNA:   3'- -GGCA-GUGCGGCAGGAGgCUCuCCgcg -5'
1598 3' -59.5 NC_001347.2 + 132667 0.72 0.60133
Target:  5'- aCGUCuuGCCGUCgUCCGucacccGGGCGUc -3'
miRNA:   3'- gGCAGugCGGCAGgAGGCuc----UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 92253 0.71 0.639449
Target:  5'- cCCG-CAgGCCGUggCCgCCGccauGAGGCGCg -3'
miRNA:   3'- -GGCaGUgCGGCA--GGaGGCu---CUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 153788 0.71 0.646123
Target:  5'- gCCGcUCAgGCCGUgguaguccgagucgCCUCCGGGcgagguGGGUGCu -3'
miRNA:   3'- -GGC-AGUgCGGCA--------------GGAGGCUC------UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 2095 0.7 0.677485
Target:  5'- gCCGUacgGCGCCG-CCggCG-GGGGCGCg -3'
miRNA:   3'- -GGCAg--UGCGGCaGGagGCuCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 42333 0.69 0.74252
Target:  5'- -aGUCACGCguaCG-CCUCUGGuGuGGCGCg -3'
miRNA:   3'- ggCAGUGCG---GCaGGAGGCU-CuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 152637 0.69 0.751535
Target:  5'- -aGUCACGUCGaUCUUgacgcugcuggCCGAGAcGGCGUg -3'
miRNA:   3'- ggCAGUGCGGC-AGGA-----------GGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 8608 0.69 0.751535
Target:  5'- cCCGUCACGCaggcgcuggCGUUC-CCGuAGcGGGUGCg -3'
miRNA:   3'- -GGCAGUGCG---------GCAGGaGGC-UC-UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 91165 0.69 0.760459
Target:  5'- aCGUUuCGcCCGUgCUCCGAGGagcaGCGCg -3'
miRNA:   3'- gGCAGuGC-GGCAgGAGGCUCUc---CGCG- -5'
1598 3' -59.5 NC_001347.2 + 116679 0.68 0.775399
Target:  5'- gCCGUCgccaccuccgGCGCUGUCCUCgCGAcguGAGggaucccagccgcuGCGCa -3'
miRNA:   3'- -GGCAG----------UGCGGCAGGAG-GCU---CUC--------------CGCG- -5'
1598 3' -59.5 NC_001347.2 + 168551 0.68 0.778003
Target:  5'- gUCG-CGCGCCGUCUguaCCGu--GGCGUg -3'
miRNA:   3'- -GGCaGUGCGGCAGGa--GGCucuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 156835 0.68 0.778003
Target:  5'- uCCG-CGCGUCGgCCUCUG-GAGGaGCa -3'
miRNA:   3'- -GGCaGUGCGGCaGGAGGCuCUCCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.