miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 3' -59.5 NC_001347.2 + 151552 0.67 0.857813
Target:  5'- gCGUCACGCgugaCGUCCUCuCGcugcucuuuGAGGauCGCg -3'
miRNA:   3'- gGCAGUGCG----GCAGGAG-GCu--------CUCC--GCG- -5'
1598 3' -59.5 NC_001347.2 + 127187 0.67 0.850534
Target:  5'- aCGUCuucuGCGCCGUggCCUCCGAaaccuGGCa- -3'
miRNA:   3'- gGCAG----UGCGGCA--GGAGGCUcu---CCGcg -5'
1598 3' -59.5 NC_001347.2 + 153212 0.67 0.850534
Target:  5'- gUCGUgCAgGUCGUgCagCGuGAGGCGCg -3'
miRNA:   3'- -GGCA-GUgCGGCAgGagGCuCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 192212 0.67 0.850534
Target:  5'- gCGUCcCGCCG---UCCGAGAcGGUGUa -3'
miRNA:   3'- gGCAGuGCGGCaggAGGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 21081 0.67 0.843083
Target:  5'- uCCGUCACGCCGUCuguCUCUaccuGGacaGCa -3'
miRNA:   3'- -GGCAGUGCGGCAG---GAGGcucuCCg--CG- -5'
1598 3' -59.5 NC_001347.2 + 96659 0.67 0.843083
Target:  5'- gCGUCACGCUGg---CCGAaggcacGAcGGCGCg -3'
miRNA:   3'- gGCAGUGCGGCaggaGGCU------CU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 69525 0.67 0.835465
Target:  5'- gUCGUCGuCGCCGgcuucgCCUCCucGGAaGCGCc -3'
miRNA:   3'- -GGCAGU-GCGGCa-----GGAGGc-UCUcCGCG- -5'
1598 3' -59.5 NC_001347.2 + 208515 0.67 0.827687
Target:  5'- --uUCGCGCuCGUCCUCCucgcacGAG-GGCaGCa -3'
miRNA:   3'- ggcAGUGCG-GCAGGAGG------CUCuCCG-CG- -5'
1598 3' -59.5 NC_001347.2 + 24499 0.68 0.811673
Target:  5'- uUGUCACGuuGUCUgggcgCCc-GAGGUGCu -3'
miRNA:   3'- gGCAGUGCggCAGGa----GGcuCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 222842 0.68 0.803451
Target:  5'- aCGU--CGCCGgCCUCCaggagGAGAuGGCGCu -3'
miRNA:   3'- gGCAguGCGGCaGGAGG-----CUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 100883 0.68 0.803451
Target:  5'- gCGgcgcaGCGCCGgccaUUCUCCGGGucGCGCu -3'
miRNA:   3'- gGCag---UGCGGC----AGGAGGCUCucCGCG- -5'
1598 3' -59.5 NC_001347.2 + 193897 0.68 0.803451
Target:  5'- cCCGUCAUGCCG-CUgggcgaaaUUGAG-GGCGCc -3'
miRNA:   3'- -GGCAGUGCGGCaGGa-------GGCUCuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 228481 0.68 0.778003
Target:  5'- aCUGUaCACggcgGCCGUggCCUCCGAGuaaaaaaaccAGGUGCu -3'
miRNA:   3'- -GGCA-GUG----CGGCA--GGAGGCUC----------UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 168551 0.68 0.778003
Target:  5'- gUCG-CGCGCCGUCUguaCCGu--GGCGUg -3'
miRNA:   3'- -GGCaGUGCGGCAGGa--GGCucuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 156835 0.68 0.778003
Target:  5'- uCCG-CGCGUCGgCCUCUG-GAGGaGCa -3'
miRNA:   3'- -GGCaGUGCGGCaGGAGGCuCUCCgCG- -5'
1598 3' -59.5 NC_001347.2 + 116679 0.68 0.775399
Target:  5'- gCCGUCgccaccuccgGCGCUGUCCUCgCGAcguGAGggaucccagccgcuGCGCa -3'
miRNA:   3'- -GGCAG----------UGCGGCAGGAG-GCU---CUC--------------CGCG- -5'
1598 3' -59.5 NC_001347.2 + 91165 0.69 0.760459
Target:  5'- aCGUUuCGcCCGUgCUCCGAGGagcaGCGCg -3'
miRNA:   3'- gGCAGuGC-GGCAgGAGGCUCUc---CGCG- -5'
1598 3' -59.5 NC_001347.2 + 152637 0.69 0.751535
Target:  5'- -aGUCACGUCGaUCUUgacgcugcuggCCGAGAcGGCGUg -3'
miRNA:   3'- ggCAGUGCGGC-AGGA-----------GGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 8608 0.69 0.751535
Target:  5'- cCCGUCACGCaggcgcuggCGUUC-CCGuAGcGGGUGCg -3'
miRNA:   3'- -GGCAGUGCG---------GCAGGaGGC-UC-UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 42333 0.69 0.74252
Target:  5'- -aGUCACGCguaCG-CCUCUGGuGuGGCGCg -3'
miRNA:   3'- ggCAGUGCG---GCaGGAGGCU-CuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.