Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1598 | 3' | -59.5 | NC_001347.2 | + | 94319 | 0.66 | 0.902973 |
Target: 5'- gCCGccCACGgCGUCCUCgGcgucgucGGAGGCcgguGCg -3' miRNA: 3'- -GGCa-GUGCgGCAGGAGgC-------UCUCCG----CG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 96659 | 0.67 | 0.843083 |
Target: 5'- gCGUCACGCUGg---CCGAaggcacGAcGGCGCg -3' miRNA: 3'- gGCAGUGCGGCaggaGGCU------CU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 100883 | 0.68 | 0.803451 |
Target: 5'- gCGgcgcaGCGCCGgccaUUCUCCGGGucGCGCu -3' miRNA: 3'- gGCag---UGCGGC----AGGAGGCUCucCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 113465 | 0.66 | 0.891459 |
Target: 5'- cCCGUCACgGUCGgCCgCCGuGAGGUc- -3' miRNA: 3'- -GGCAGUG-CGGCaGGaGGCuCUCCGcg -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 116174 | 0.67 | 0.864915 |
Target: 5'- gCCGaaCAUGCCGaugaguagaUCCGAGGcGGCGCg -3' miRNA: 3'- -GGCa-GUGCGGCagg------AGGCUCU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 116679 | 0.68 | 0.775399 |
Target: 5'- gCCGUCgccaccuccgGCGCUGUCCUCgCGAcguGAGggaucccagccgcuGCGCa -3' miRNA: 3'- -GGCAG----------UGCGGCAGGAG-GCU---CUC--------------CGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 127187 | 0.67 | 0.850534 |
Target: 5'- aCGUCuucuGCGCCGUggCCUCCGAaaccuGGCa- -3' miRNA: 3'- gGCAG----UGCGGCA--GGAGGCUcu---CCGcg -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 127247 | 0.66 | 0.903558 |
Target: 5'- uCCGUCACguacccgacaGCCGuUUCUCgGAcGAGGCc- -3' miRNA: 3'- -GGCAGUG----------CGGC-AGGAGgCU-CUCCGcg -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 132667 | 0.72 | 0.60133 |
Target: 5'- aCGUCuuGCCGUCgUCCGucacccGGGCGUc -3' miRNA: 3'- gGCAGugCGGCAGgAGGCuc----UCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 149138 | 0.66 | 0.897609 |
Target: 5'- uCUGUCACGCCGgccaccaagaCCUCCaucuauGGGuacGGGaCGCg -3' miRNA: 3'- -GGCAGUGCGGCa---------GGAGG------CUC---UCC-GCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 151552 | 0.67 | 0.857813 |
Target: 5'- gCGUCACGCgugaCGUCCUCuCGcugcucuuuGAGGauCGCg -3' miRNA: 3'- gGCAGUGCG----GCAGGAG-GCu--------CUCC--GCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 152637 | 0.69 | 0.751535 |
Target: 5'- -aGUCACGUCGaUCUUgacgcugcuggCCGAGAcGGCGUg -3' miRNA: 3'- ggCAGUGCGGC-AGGA-----------GGCUCU-CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 153212 | 0.67 | 0.850534 |
Target: 5'- gUCGUgCAgGUCGUgCagCGuGAGGCGCg -3' miRNA: 3'- -GGCA-GUgCGGCAgGagGCuCUCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 153788 | 0.71 | 0.646123 |
Target: 5'- gCCGcUCAgGCCGUgguaguccgagucgCCUCCGGGcgagguGGGUGCu -3' miRNA: 3'- -GGC-AGUgCGGCA--------------GGAGGCUC------UCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 156835 | 0.68 | 0.778003 |
Target: 5'- uCCG-CGCGUCGgCCUCUG-GAGGaGCa -3' miRNA: 3'- -GGCaGUGCGGCaGGAGGCuCUCCgCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 156912 | 0.72 | 0.582364 |
Target: 5'- gCCGUgCGCGCCGUCCUUgGAGcGGa-- -3' miRNA: 3'- -GGCA-GUGCGGCAGGAGgCUCuCCgcg -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 166619 | 1.14 | 0.001406 |
Target: 5'- aCCGUCACGCCGUCCUCCGAGAGGCGCg -3' miRNA: 3'- -GGCAGUGCGGCAGGAGGCUCUCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 168551 | 0.68 | 0.778003 |
Target: 5'- gUCG-CGCGCCGUCUguaCCGu--GGCGUg -3' miRNA: 3'- -GGCaGUGCGGCAGGa--GGCucuCCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 175057 | 0.66 | 0.884465 |
Target: 5'- gCG--GCGCCGUCUUcggcgugcaucCCGAGAcgcggcaGGCGCa -3' miRNA: 3'- gGCagUGCGGCAGGA-----------GGCUCU-------CCGCG- -5' |
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1598 | 3' | -59.5 | NC_001347.2 | + | 177166 | 0.67 | 0.864915 |
Target: 5'- aCCGUCAgGUg---CUCCGAGAcGCGCg -3' miRNA: 3'- -GGCAGUgCGgcagGAGGCUCUcCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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