miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 3' -59.5 NC_001347.2 + 153212 0.67 0.850534
Target:  5'- gUCGUgCAgGUCGUgCagCGuGAGGCGCg -3'
miRNA:   3'- -GGCA-GUgCGGCAgGagGCuCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 152637 0.69 0.751535
Target:  5'- -aGUCACGUCGaUCUUgacgcugcuggCCGAGAcGGCGUg -3'
miRNA:   3'- ggCAGUGCGGC-AGGA-----------GGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 151552 0.67 0.857813
Target:  5'- gCGUCACGCgugaCGUCCUCuCGcugcucuuuGAGGauCGCg -3'
miRNA:   3'- gGCAGUGCG----GCAGGAG-GCu--------CUCC--GCG- -5'
1598 3' -59.5 NC_001347.2 + 149138 0.66 0.897609
Target:  5'- uCUGUCACGCCGgccaccaagaCCUCCaucuauGGGuacGGGaCGCg -3'
miRNA:   3'- -GGCAGUGCGGCa---------GGAGG------CUC---UCC-GCG- -5'
1598 3' -59.5 NC_001347.2 + 132667 0.72 0.60133
Target:  5'- aCGUCuuGCCGUCgUCCGucacccGGGCGUc -3'
miRNA:   3'- gGCAGugCGGCAGgAGGCuc----UCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 127247 0.66 0.903558
Target:  5'- uCCGUCACguacccgacaGCCGuUUCUCgGAcGAGGCc- -3'
miRNA:   3'- -GGCAGUG----------CGGC-AGGAGgCU-CUCCGcg -5'
1598 3' -59.5 NC_001347.2 + 127187 0.67 0.850534
Target:  5'- aCGUCuucuGCGCCGUggCCUCCGAaaccuGGCa- -3'
miRNA:   3'- gGCAG----UGCGGCA--GGAGGCUcu---CCGcg -5'
1598 3' -59.5 NC_001347.2 + 116679 0.68 0.775399
Target:  5'- gCCGUCgccaccuccgGCGCUGUCCUCgCGAcguGAGggaucccagccgcuGCGCa -3'
miRNA:   3'- -GGCAG----------UGCGGCAGGAG-GCU---CUC--------------CGCG- -5'
1598 3' -59.5 NC_001347.2 + 116174 0.67 0.864915
Target:  5'- gCCGaaCAUGCCGaugaguagaUCCGAGGcGGCGCg -3'
miRNA:   3'- -GGCa-GUGCGGCagg------AGGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 113465 0.66 0.891459
Target:  5'- cCCGUCACgGUCGgCCgCCGuGAGGUc- -3'
miRNA:   3'- -GGCAGUG-CGGCaGGaGGCuCUCCGcg -5'
1598 3' -59.5 NC_001347.2 + 100883 0.68 0.803451
Target:  5'- gCGgcgcaGCGCCGgccaUUCUCCGGGucGCGCu -3'
miRNA:   3'- gGCag---UGCGGC----AGGAGGCUCucCGCG- -5'
1598 3' -59.5 NC_001347.2 + 96659 0.67 0.843083
Target:  5'- gCGUCACGCUGg---CCGAaggcacGAcGGCGCg -3'
miRNA:   3'- gGCAGUGCGGCaggaGGCU------CU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 94319 0.66 0.902973
Target:  5'- gCCGccCACGgCGUCCUCgGcgucgucGGAGGCcgguGCg -3'
miRNA:   3'- -GGCa-GUGCgGCAGGAGgC-------UCUCCG----CG- -5'
1598 3' -59.5 NC_001347.2 + 92253 0.71 0.639449
Target:  5'- cCCG-CAgGCCGUggCCgCCGccauGAGGCGCg -3'
miRNA:   3'- -GGCaGUgCGGCA--GGaGGCu---CUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 91165 0.69 0.760459
Target:  5'- aCGUUuCGcCCGUgCUCCGAGGagcaGCGCg -3'
miRNA:   3'- gGCAGuGC-GGCAgGAGGCUCUc---CGCG- -5'
1598 3' -59.5 NC_001347.2 + 89296 0.66 0.903558
Target:  5'- aCGUgaugagaccCGCGUCGUUCagCGAGAGaGCGUc -3'
miRNA:   3'- gGCA---------GUGCGGCAGGagGCUCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 88222 0.73 0.545778
Target:  5'- gCCGcUCACGCUGUCCgaggggucgcugccgCCGgugaAGAGaGCGCg -3'
miRNA:   3'- -GGC-AGUGCGGCAGGa--------------GGC----UCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 83873 0.66 0.891459
Target:  5'- gUGUCGCGCCGUCCgcuacuUUCGcGGAcGCGg -3'
miRNA:   3'- gGCAGUGCGGCAGG------AGGC-UCUcCGCg -5'
1598 3' -59.5 NC_001347.2 + 81480 0.66 0.878568
Target:  5'- -aGUgGCGUCGUCgCUCgGcGGGuGCGCa -3'
miRNA:   3'- ggCAgUGCGGCAG-GAGgCuCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 69525 0.67 0.835465
Target:  5'- gUCGUCGuCGCCGgcuucgCCUCCucGGAaGCGCc -3'
miRNA:   3'- -GGCAGU-GCGGCa-----GGAGGc-UCUcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.